SMTL ID : 1i4y.1

THE CRYSTAL STRUCTURE OF PHASCOLOPSIS GOULDII WILD TYPE METHEMERYTHRIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-octamer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 8 residues within 4Å: Chain D: H.26, L.29, H.55, L.99, H.102, I.103, D.107 Ligands: FEO.12 Ligand excluded by PLIP CL.2: 8 residues within 4Å: Chain E: H.26, L.29, H.55, L.99, H.102, I.103, D.107 Ligands: FEO.13 Ligand excluded by PLIP CL.3: 8 residues within 4Å: Chain B: H.26, L.29, H.55, L.99, H.102, I.103, D.107 Ligands: FEO.10 Ligand excluded by PLIP CL.4: 8 residues within 4Å: Chain C: H.26, L.29, H.55, L.99, H.102, I.103, D.107 Ligands: FEO.11 Ligand excluded by PLIP CL.5: 9 residues within 4Å: Chain H: H.26, L.29, H.55, F.56, L.99, H.102, I.103, D.107 Ligands: FEO.16 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain G: H.26, L.29, H.55, L.99, H.102, I.103, D.107 Ligands: FEO.15 Ligand excluded by PLIP CL.7: 9 residues within 4Å: Chain F: H.26, L.29, H.55, F.56, L.99, H.102, I.103, D.107 Ligands: FEO.14 Ligand excluded by PLIP CL.8: 8 residues within 4Å: Chain A: H.26, L.29, H.55, L.99, H.102, I.103, D.107 Ligands: FEO.9 Ligand excluded by PLIP

8 x FEO: MU-OXO-DIIRON(Non-covalent)

FEO.9: 9 residues within 4Å: Chain A: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.8 9 PLIP interactions: 9 interactions with chain A, Metal complexes: A:H.26, A:H.55, A:E.59, A:E.59, A:H.74, A:H.78, A:H.102, A:D.107, A:D.107 FEO.10: 9 residues within 4Å: Chain B: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.3 9 PLIP interactions: 9 interactions with chain B, Metal complexes: B:H.26, B:H.55, B:E.59, B:E.59, B:H.74, B:H.78, B:H.102, B:D.107, B:D.107 FEO.11: 9 residues within 4Å: Chain C: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.4 9 PLIP interactions: 9 interactions with chain C, Metal complexes: C:H.26, C:H.55, C:E.59, C:E.59, C:H.74, C:H.78, C:H.102, C:D.107, C:D.107 FEO.12: 9 residues within 4Å: Chain D: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.1 9 PLIP interactions: 9 interactions with chain D, Metal complexes: D:H.26, D:H.55, D:E.59, D:E.59, D:H.74, D:H.78, D:H.102, D:D.107, D:D.107 FEO.13: 9 residues within 4Å: Chain E: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.2 9 PLIP interactions: 9 interactions with chain E, Metal complexes: E:H.26, E:H.55, E:E.59, E:E.59, E:H.74, E:H.78, E:H.102, E:D.107, E:D.107 FEO.14: 9 residues within 4Å: Chain F: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.7 9 PLIP interactions: 9 interactions with chain F, Metal complexes: F:H.26, F:H.55, F:E.59, F:E.59, F:H.74, F:H.78, F:H.102, F:D.107, F:D.107 FEO.15: 9 residues within 4Å: Chain G: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.6 9 PLIP interactions: 9 interactions with chain G, Metal complexes: G:H.26, G:H.55, G:E.59, G:E.59, G:H.74, G:H.78, G:H.102, G:D.107, G:D.107 FEO.16: 9 residues within 4Å: Chain H: H.26, H.55, F.56, E.59, H.74, H.78, H.102, D.107 Ligands: CL.5 9 PLIP interactions: 9 interactions with chain H, Metal complexes: H:H.26, H:H.55, H:E.59, H:E.59, H:H.74, H:H.78, H:H.102, H:D.107, H:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Farmer, C.S. et al., The crystal structures of Phascolopsis gouldii wild type and L98Y methemerythrins: structural and functional alterations of the O2 binding pocket. J.Biol.Inorg.Chem. (2001)

Release Date

2001-03-21

Peptides

METHEMERYTHRIN: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

METHEMERYTHRIN