SMTL ID : 1i5r.1 (1 other biounit)

TYPE 1 17-BETA HYDROXYSTEROID DEHYDROGENASE EM1745 COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x HYC: O5'-[9-(3,17B-DIHYDROXY-1,3,5(10)-ESTRATRIEN-16B-YL)-NONANOYL]ADENOSINE(Non-covalent)

HYC.1: 34 residues within 4Å: Chain A: G.9, S.11, S.12, R.37, L.64, D.65, V.66, R.67, N.90, A.91, G.92, L.93, G.94, V.113, S.142, V.143, G.144, M.147, L.149, Y.155, G.186, P.187, F.192, M.193, E.194, Y.218, H.221, S.222, V.225, F.226, F.259, M.279, E.282 Ligands: GOL.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:V.143, A:L.149, A:L.149, A:F.192, A:F.192, A:E.194, A:V.225, A:V.225, A:F.226, A:F.259 Hydrogen bonds: A:G.9, A:S.11, A:S.11, A:S.11, A:S.12, A:R.37, A:D.65, A:D.65, A:V.66, A:G.92, A:Y.155, A:C.185 Water bridges: A:R.37, A:N.90, A:N.90, A:K.159, A:H.221, A:E.282 HYC.5: 34 residues within 4Å: Chain B: G.9, S.11, S.12, R.37, L.64, D.65, V.66, R.67, N.90, A.91, G.92, L.93, G.94, V.113, S.142, V.143, G.144, M.147, L.149, Y.155, G.186, P.187, F.192, M.193, E.194, Y.218, H.221, S.222, V.225, F.226, F.259, M.279, E.282 Ligands: GOL.6 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:V.143, B:L.149, B:L.149, B:F.192, B:F.192, B:E.194, B:V.225, B:V.225, B:F.226, B:F.259 Hydrogen bonds: B:G.9, B:S.11, B:S.11, B:S.11, B:S.12, B:R.37, B:D.65, B:V.66, B:G.92, B:C.185 Water bridges: B:R.37, B:N.90, B:N.90, B:Y.155, B:K.159, B:H.221, B:E.282

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: C.185, G.186, P.187, V.188, F.192, F.226 Ligands: HYC.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.186, A:V.188, A:V.188 GOL.3: 8 residues within 4Å: Chain A: R.266, D.269, P.270 Chain B: L.146, R.252, F.254 Ligands: GOL.4, GOL.8 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.252, A:R.266, A:R.266, A:R.266, A:P.270 Water bridges: B:R.252 GOL.4: 12 residues within 4Å: Chain A: G.145, F.160, E.163, R.266 Chain B: G.145, L.146, F.160, E.163, R.266 Ligands: GOL.3, GOL.7, GOL.8 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.266, A:R.266, B:R.266 Water bridges: A:E.163 GOL.6: 7 residues within 4Å: Chain B: C.185, G.186, P.187, V.188, F.192, F.226 Ligands: HYC.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.186, B:V.188, B:V.188 Water bridges: B:Y.155 GOL.7: 8 residues within 4Å: Chain A: L.146, R.252, F.254 Chain B: R.266, D.269, P.270 Ligands: GOL.4, GOL.8 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.252, B:R.266, B:R.266, B:R.266, B:P.270 Water bridges: A:R.252 GOL.8: 12 residues within 4Å: Chain A: G.145, L.146, F.160, E.163, R.266 Chain B: G.145, F.160, E.163, R.266 Ligands: GOL.3, GOL.4, GOL.7 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.266, B:R.266, B:R.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., A concerted, rational design of type 1 17beta-hydroxysteroid dehydrogenase inhibitors: estradiol-adenosine hybrids with high affinity. FASEB J. (2002)

Release Date

2003-03-11

Peptides

TYPE 1 17 BETA-HYDROXYSTEROID DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

TYPE 1 17 BETA-HYDROXYSTEROID DEHYDROGENASE

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