- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.72 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- 2 x TYM: TRYPTOPHANYL-5'AMP(Non-covalent)
TYM.9: 26 residues within 4Å:- Chain A: F.5, S.6, G.7, I.8, Q.9, G.17, N.18, G.21, A.22, V.40, H.43, Y.125, M.129, D.132, I.133, V.141, V.143, G.144, D.146, Q.147, G.180, A.181, R.182, I.183, K.192, M.193
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:F.5, A:F.5, A:V.40, A:I.133, A:V.141, A:V.143
- Hydrogen bonds: A:Q.9, A:Q.9, A:N.18, A:G.21, A:Y.125, A:D.132, A:G.144, A:D.146, A:I.183, A:I.183, A:K.192
- Water bridges: A:P.142, A:Q.147, A:Q.147, A:K.195, A:K.195
- Salt bridges: A:K.195, A:K.195
TYM.24: 26 residues within 4Å:- Chain B: F.5, S.6, G.7, I.8, Q.9, G.17, N.18, G.21, A.22, V.40, H.43, Y.125, M.129, D.132, I.133, V.141, V.143, G.144, D.146, Q.147, G.180, A.181, R.182, I.183, K.192, M.193
28 PLIP interactions:28 interactions with chain B- Hydrophobic interactions: B:F.5, B:F.5, B:V.40, B:I.133, B:V.141, B:V.143
- Hydrogen bonds: B:Q.9, B:Q.9, B:N.18, B:G.21, B:Y.125, B:Y.125, B:D.132, B:D.132, B:G.144, B:D.146, B:I.183, B:I.183, B:K.192
- Water bridges: B:T.15, B:P.142, B:D.146, B:Q.147, B:Q.147, B:K.195, B:K.195
- Salt bridges: B:K.195, B:K.195
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 11 residues within 4Å:- Chain A: Y.33, N.34, C.35, Y.36, T.73, Q.74, A.75, T.76, K.306
- Ligands: NH4.8, GOL.12
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:C.35, A:Y.36, A:T.73, A:Q.74, A:K.306
GOL.11: 8 residues within 4Å:- Chain A: S.11, G.12, V.13, I.14, N.57, R.60, T.205, L.206
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:I.14, A:L.206
- Water bridges: A:S.11, A:S.11, A:G.12, A:N.57
GOL.12: 3 residues within 4Å:- Chain A: K.306, R.309
- Ligands: GOL.10
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.309, A:R.309
- Water bridges: A:K.306
GOL.13: 5 residues within 4Å:- Chain A: H.52, R.55, Q.56, R.59
- Ligands: SO4.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.52, A:R.55, A:Q.56
- Water bridges: A:R.59
GOL.14: 4 residues within 4Å:- Chain A: K.192, S.194, K.195, S.196
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.192, A:K.192, A:K.195, A:S.196
- Water bridges: A:K.111
GOL.15: 3 residues within 4Å:- Chain A: E.214, K.215, K.218
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.214
- Water bridges: A:S.219
GOL.25: 11 residues within 4Å:- Chain B: Y.33, N.34, C.35, Y.36, T.73, Q.74, A.75, T.76, K.306
- Ligands: NH4.23, GOL.27
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:C.35, B:Y.36, B:T.73, B:Q.74, B:T.76, B:K.306
GOL.26: 8 residues within 4Å:- Chain B: S.11, G.12, V.13, I.14, N.57, R.60, T.205, L.206
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:I.14, B:L.206
- Water bridges: B:S.11, B:S.11, B:G.12, B:N.57, B:T.205
GOL.27: 3 residues within 4Å:- Chain B: K.306, R.309
- Ligands: GOL.25
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.309, B:R.309
- Water bridges: B:K.306
GOL.28: 5 residues within 4Å:- Chain B: H.52, R.55, Q.56, R.59
- Ligands: SO4.18
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.52, B:R.55, B:Q.56
- Water bridges: B:R.59
GOL.29: 4 residues within 4Å:- Chain B: K.192, S.194, K.195, S.196
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.192, B:K.192, B:K.195, B:S.196
- Water bridges: B:N.18, B:K.111
GOL.30: 3 residues within 4Å:- Chain B: E.214, K.215, K.218
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.214, B:E.214
- Water bridges: B:S.219
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Retailleau, P. et al., High-resolution experimental phases for tryptophanyl-tRNA synthetase (TrpRS) complexed with tryptophanyl-5'AMP. Acta Crystallogr.,Sect.D (2001)
- Release Date
- 2001-11-07
- Peptides
- TRYPTOPHANYL-TRNA SYNTHETASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.72 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- 2 x TYM: TRYPTOPHANYL-5'AMP(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Retailleau, P. et al., High-resolution experimental phases for tryptophanyl-tRNA synthetase (TrpRS) complexed with tryptophanyl-5'AMP. Acta Crystallogr.,Sect.D (2001)
- Release Date
- 2001-11-07
- Peptides
- TRYPTOPHANYL-TRNA SYNTHETASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A