SMTL ID : 1i73.1

COMPLEX OF PRO-LEU-L-TRP PHOSPHONATE WITH THE CATALITIC DOMAIN OF MATRIX METALLO PROTEINASE-8 (MET80 FORM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x PRO- LEU- PAT: THREE RESIDUE PEPTIDE INHIBITOR(Non-covalent)

PRO-LEU-PAT.1: 11 residues within 4Å: Chain A: S.72, I.80, A.82, H.83, A.84, F.85, H.118, E.119, H.122, H.128 Ligands: ZN.5 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.80, A:H.83, A:F.85, A:F.85 Hydrogen bonds: A:A.82, A:A.84, A:A.84, A:H.122 Water bridges: A:A.82

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.58, G.90, I.91, G.92, D.94 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.58, A:G.90, A:G.92, A:D.94, H2O.4, H2O.4 CA.3: 6 residues within 4Å: Chain A: D.75, G.76, N.78, I.80, D.98, E.101 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.75, A:G.76, A:N.78, A:I.80, A:D.98, A:E.101

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: H.68, D.70, H.83, H.96 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.68, A:D.70, A:H.83, A:H.96 ZN.5: 4 residues within 4Å: Chain A: H.118, H.122, H.128 Ligands: PRO-LEU-PAT.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.118, A:H.122, A:H.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gavuzzo, E. et al., Two crystal structures of human neutrophil collagenase, one complexed with a primed- and the other with an unprimed-side inhibitor: implications for drug design. J.Med.Chem. (2000)

Release Date

2001-03-21

Peptides

NEUTROPHIL COLLAGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEUTROPHIL COLLAGENASE

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