SMTL ID : 1i75.1

CRYSTAL STRUCTURE OF CYCLODEXTRIN GLUCANOTRANSFERASE FROM ALKALOPHILIC BACILLUS SP.#1011 COMPLEXED WITH 1-DEOXYNOJIRIMYCIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.27, N.29, N.32, N.33, G.51, D.53 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.27, A:N.29, A:G.51, A:D.53, H2O.11 CA.2: 4 residues within 4Å: Chain A: N.139, I.190, D.199, H.233 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.190, A:D.199, A:H.233, H2O.2, H2O.10 CA.5: 6 residues within 4Å: Chain B: D.27, N.29, N.32, N.33, G.51, D.53 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.27, B:N.29, B:G.51, B:D.53, H2O.20 CA.6: 4 residues within 4Å: Chain B: N.139, I.190, D.199, H.233 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:I.190, B:D.199, B:H.233, H2O.14, H2O.19

4 x NOJ: 1-DEOXYNOJIRIMYCIN(Non-covalent)

NOJ.3: 6 residues within 4Å: Chain A: Y.100, H.140, L.194, L.197, D.229, D.328 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.328 Water bridges: A:R.227, A:H.233 NOJ.4: 4 residues within 4Å: Chain A: W.616, K.651, W.662, N.667 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.667 Water bridges: A:K.651 NOJ.7: 6 residues within 4Å: Chain B: Y.100, H.140, L.194, D.229, H.233, D.328 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.140, B:H.233 Water bridges: B:R.227, B:D.229, B:A.230 NOJ.8: 4 residues within 4Å: Chain B: W.616, K.651, W.662, N.667 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.667

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanai, R. et al., Crystal structure of cyclodextrin glucanotransferase from alkalophilic Bacillus sp. 1011 complexed with 1-deoxynojirimycin at 2.0 A resolution. J.Biochem.(Tokyo) (2001)

Release Date

2001-04-11

Peptides

CYCLODEXTRIN GLUCANOTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CYCLODEXTRIN GLUCANOTRANSFERASE

Related Entries With Identical Sequence