SMTL ID : 1ia5.1

POLYGALACTURONASE FROM ASPERGILLUS ACULEATUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 4 residues within 4Å: Chain A: Y.168, N.190, Y.192, N.219 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.192 Hydrogen bonds: A:Y.168

10 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 2 residues within 4Å: Chain A: T.3, T.5 No protein-ligand interaction detected (PLIP) MAN.3: 2 residues within 4Å: Chain A: T.5, S.7 No protein-ligand interaction detected (PLIP) MAN.4: 2 residues within 4Å: Chain A: S.9, N.10 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.9, A:N.10 MAN.5: 5 residues within 4Å: Chain A: N.10, S.13, K.17 Ligands: MAN.6, MAN.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.10, A:K.17, A:K.17 MAN.6: 4 residues within 4Å: Chain A: N.10, S.14 Ligands: MAN.5, MAN.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.10 MAN.7: 4 residues within 4Å: Chain A: S.13, S.16, D.39 Ligands: MAN.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.13, A:D.39 Water bridges: A:D.39 MAN.8: 5 residues within 4Å: Chain A: F.6, S.14, K.17, S.18 Ligands: MAN.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.14 MAN.9: 6 residues within 4Å: Chain A: A.1, T.20, S.21, C.22, S.23, N.44 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.1, A:T.20, A:N.44 Water bridges: A:N.44 MAN.10: 4 residues within 4Å: Chain A: T.3, S.23, T.24, H.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.3 Water bridges: A:S.23 MAN.11: 3 residues within 4Å: Chain A: S.34, Y.59, K.60 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.60 Water bridges: A:S.34, A:S.34, A:S.34, A:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, S.W. et al., The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex. J.Mol.Biol. (2001)

Release Date

2001-09-19

Peptides

POLYGALACTURONASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLYGALACTURONASE

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