SMTL ID : 1ic1.1 (1 other biounit)

THE CRYSTAL STRUCTURE FOR THE N-TERMINAL TWO DOMAINS OF ICAM-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: T.85, P.86, E.87, E.174, N.175 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain B: T.85, P.86, E.87, E.174, N.175 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.103, T.145, V.146, L.147, H.152 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.146, A:L.147 Hydrogen bonds: A:T.145, A:T.145, A:L.147 NAG.3: 4 residues within 4Å: Chain A: A.117, N.118, P.167, Q.168 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.167 Hydrogen bonds: A:N.118, A:Q.168 Water bridges: A:A.117 NAG.4: 5 residues within 4Å: Chain A: G.126, G.154, A.155, N.156, Q.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.126, A:N.156, A:Q.181 NAG.6: 5 residues within 4Å: Chain B: N.103, T.145, V.146, L.147, H.152 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.146, B:L.147 Hydrogen bonds: B:T.145, B:T.145, B:L.147 NAG.7: 4 residues within 4Å: Chain B: A.117, N.118, P.167, Q.168 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.167 Hydrogen bonds: B:N.118, B:Q.168 Water bridges: B:A.117 NAG.8: 5 residues within 4Å: Chain B: G.126, G.154, A.155, N.156, Q.181 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.126, B:N.156, B:Q.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Casasnovas, J.M. et al., A dimeric crystal structure for the N-terminal two domains of intercellular adhesion molecule-1. Proc.Natl.Acad.Sci.USA (1998)

Release Date

1998-06-17

Peptides

INTERCELLULAR ADHESION MOLECULE-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

INTERCELLULAR ADHESION MOLECULE-1

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