SMTL ID : 1icf.3 (2 other biounits)

CRYSTAL STRUCTURE OF MHC CLASS II ASSOCIATED P41 II FRAGMENT IN COMPLEX WITH CATHEPSIN L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain C: N.47, T.49 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain C Water bridges: D:E.159 Hydrogen bonds: C:N.47, C:T.49, C:T.49 NAG.2: 3 residues within 4Å: Chain F: F.45, N.47, T.49 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:N.47, F:T.49, F:T.49 Water bridges: F:N.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guncar, G. et al., Crystal structure of MHC class II-associated p41 Ii fragment bound to cathepsin L reveals the structural basis for differentiation between cathepsins L and S. EMBO J. (1999)

Release Date

2000-01-12

Peptides

PROTEIN (CATHEPSIN L: HEAVY CHAIN): AD
PROTEIN (CATHEPSIN L: LIGHT CHAIN): BE
PROTEIN (INVARIANT CHAIN): CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
C

B
B

E
D

C
I

F
J

PROTEIN (CATHEPSIN L: HEAVY CHAIN)

PROTEIN (CATHEPSIN L: LIGHT CHAIN)

PROTEIN (INVARIANT CHAIN)

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