SMTL ID : 1ig0.1

Crystal Structure of yeast Thiamin Pyrophosphokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x VIB: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM(Non-covalent)

VIB.1: 12 residues within 4Å: Chain A: Q.122, Y.123, S.124, T.125 Chain B: C.5, W.270, V.272, W.275, S.285, S.286, S.287, N.288 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:W.270, B:W.270, B:V.272, B:W.275 Hydrogen bonds: B:S.287, A:Q.122 Water bridges: B:S.286, A:D.126, A:Q.198 VIB.2: 11 residues within 4Å: Chain A: W.270, V.272, W.275, S.285, S.286, S.287, N.288 Chain B: Q.122, Y.123, S.124, T.125 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.270, A:W.270, A:V.272, A:W.275 Hydrogen bonds: A:S.287, A:N.288, B:Q.122 Water bridges: A:S.286, B:D.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baker, L.J. et al., The crystal structure of yeast thiamin pyrophosphokinase. Structure (2001)

Release Date

2001-06-20

Peptides

Thiamin pyrophosphokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thiamin pyrophosphokinase