SMTL ID : 1igy.1

STRUCTURE OF IMMUNOGLOBULIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NDG- BMA- MAN- NAG- GAL- MAN- NAG- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-BMA-MAN-NAG-GAL-MAN-NAG-FUL.1: 18 residues within 4Å: Chain B: F.232, I.233, F.234, P.235, P.236, K.237, D.240, K.249, V.250, T.251, V.255, D.256, F.287, N.288, S.289, T.290, R.292, K.325 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.249, B:T.251, B:R.292, B:R.292 Hydrophobic interactions: B:I.233, B:K.325

1 x NAG- NDG- BMA- MAN- NAG- GAL- MAN- NAG- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.2: 20 residues within 4Å: Chain B: I.222 Chain D: V.225, F.232, I.233, F.234, P.235, P.236, K.237, D.240, K.249, V.250, T.251, V.255, D.256, F.287, N.288, S.289, T.290, R.292, K.325 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:F.234, D:T.251, D:R.292, D:R.292 Hydrophobic interactions: D:I.233, D:K.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harris, L.J. et al., Crystallographic structure of an intact IgG1 monoclonal antibody. J.Mol.Biol. (1998)

Release Date

1998-04-15

Peptides

IGG1 INTACT ANTIBODY MAB61.1.3: AC
IGG1 INTACT ANTIBODY MAB61.1.3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

IGG1 INTACT ANTIBODY MAB61.1.3

IGG1 INTACT ANTIBODY MAB61.1.3