SMTL ID : 1ih8.1

NH3-dependent NAD+ Synthetase from Bacillus subtilis Complexed with AMP-CPP and Mg2+ ions.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.208 Ligands: APC.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.208, H2O.9, H2O.9 MG.2: 3 residues within 4Å: Chain A: E.162, D.173 Ligands: APC.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.162, H2O.2, H2O.6, H2O.9, H2O.9 MG.4: 2 residues within 4Å: Chain B: T.122, D.124 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.18, H2O.20, H2O.22, H2O.22, H2O.22

1 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.3: 20 residues within 4Å: Chain A: L.43, G.44, I.45, S.46, G.48, Q.49, D.50, S.51, R.78, L.79, Q.84, R.139, T.157, D.173, K.186, P.207, T.208, A.209 Ligands: MG.1, MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.44, A:G.44, A:S.46, A:Q.49, A:D.50, A:S.51, A:R.78, A:L.79, A:Q.84, A:R.139, A:T.157, A:T.208 Water bridges: A:D.50, A:H.81, A:R.139, A:Q.143, A:T.157, A:D.173, A:E.206, A:D.210, A:D.220, A:D.220 Salt bridges: A:K.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Devedjiev, Y. et al., Stabilization of active-site loops in NH3-dependent NAD+ synthetase from Bacillus subtilis. Acta Crystallogr.,Sect.D (2001)

Release Date

2001-06-06

Peptides

NH(3)-DEPENDENT NAD(+) synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NH(3)-DEPENDENT NAD(+) synthetase

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