SMTL ID : 1ihy.1

GAPDH complexed with ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.147, T.149, T.207, A.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.147, A:T.149, A:G.208, A:A.209 SO4.2: 5 residues within 4Å: Chain B: S.147, T.149, T.207, G.208, A.209 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.147, B:T.207, B:T.207, B:G.208, B:A.209 SO4.3: 5 residues within 4Å: Chain D: S.147, T.149, T.207, G.208, A.209 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.147, D:S.147, D:T.207, D:G.208, D:A.209 SO4.4: 5 residues within 4Å: Chain C: S.147, T.149, T.207, G.208, A.209 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.147, C:T.207, C:G.208, C:A.209 SO4.5: 3 residues within 4Å: Chain A: T.180, R.230 Ligands: APR.9 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.230 SO4.6: 4 residues within 4Å: Chain B: T.178, T.180, R.230 Ligands: APR.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.178, B:T.180, B:T.180 Salt bridges: B:R.230 SO4.7: 4 residues within 4Å: Chain D: T.178, T.180, R.230 Ligands: APR.11 2 PLIP interactions: 2 interactions with chain D Water bridges: D:R.230 Salt bridges: D:R.230 SO4.8: 4 residues within 4Å: Chain C: T.178, T.180, R.230 Ligands: APR.12 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.178, C:T.180 Salt bridges: C:R.230

4 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.9: 20 residues within 4Å: Chain A: N.6, G.7, F.8, G.9, R.10, I.11, N.30, D.31, P.32, F.33, I.34, M.76, S.94, T.95, F.98, T.178, A.179, E.313 Chain C: V.184 Ligands: SO4.5 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.6, A:F.8, A:R.10, A:I.11, A:G.12, A:M.76, A:S.94, A:T.178, A:A.179, A:E.313, A:E.313 pi-Stacking: A:F.33 APR.10: 21 residues within 4Å: Chain B: N.6, G.7, F.8, G.9, R.10, I.11, N.30, D.31, P.32, F.33, I.34, E.75, M.76, S.94, T.95, F.98, T.178, A.179, E.313 Chain D: V.184 Ligands: SO4.6 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.6, B:F.8, B:R.10, B:I.11, B:G.12, B:M.76, B:S.94, B:T.178, B:A.179, B:E.313 pi-Stacking: B:F.33 APR.11: 20 residues within 4Å: Chain B: V.184 Chain D: N.6, G.7, F.8, G.9, R.10, I.11, G.12, N.30, D.31, P.32, F.33, I.34, M.76, S.94, T.95, F.98, T.178, A.179 Ligands: SO4.7 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:N.6, D:G.9, D:R.10, D:I.11, D:G.12, D:M.76, D:S.94, D:T.178, D:A.179, D:E.313 pi-Stacking: D:F.33 APR.12: 21 residues within 4Å: Chain A: V.184 Chain C: N.6, G.7, F.8, G.9, R.10, I.11, G.12, N.30, D.31, P.32, F.33, I.34, M.76, S.94, T.95, F.98, T.178, A.179, E.313 Ligands: SO4.8 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:N.6, C:R.10, C:I.11, C:G.12, C:M.76, C:S.94, C:T.178, C:A.179, C:E.313, C:E.313 pi-Stacking: C:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, Y.Q. et al., Structures of D-glyceraldehyde-3-phosphate dehydrogenase complexed with coenzyme analogues. Acta Crystallogr.,Sect.D (2002)

Release Date

2002-07-31

Peptides

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE

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