SMTL ID : 1iin.1

thymidylyltransferase complexed with UDP-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 23 residues within 4Å: Chain A: L.9, G.11, G.12, R.16, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, N.112, Y.146, G.147, E.162, K.163, V.173, Y.177, R.195, I.200, T.201, W.224 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.89 Hydrogen bonds: A:G.11, A:Q.27, A:Q.83, A:Q.83, A:G.88, A:N.112, A:N.112, A:G.147, A:E.162, A:V.173, A:R.195 Water bridges: A:G.12, A:G.12, A:G.110, A:Y.177, A:Y.177, A:R.195, A:E.199, A:I.200 Salt bridges: A:R.16, A:K.163, A:K.163, A:R.195 UPG.2: 24 residues within 4Å: Chain B: L.9, G.11, G.12, R.16, Q.26, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, N.112, Y.146, G.147, E.162, K.163, V.173, G.175, Y.177, R.195, T.201, W.224 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:L.89 Hydrogen bonds: B:G.11, B:Q.26, B:Q.27, B:Q.83, B:Q.83, B:G.88, B:N.112, B:N.112, B:G.147, B:E.162, B:V.173, B:R.195, B:T.201 Water bridges: B:G.12, B:G.12, B:G.110, B:D.111, B:E.199, B:E.199, B:E.199 Salt bridges: B:R.16, B:K.163, B:K.163, B:R.195 UPG.3: 20 residues within 4Å: Chain C: G.11, G.12, R.16, Q.27, P.86, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, T.174, G.175, Y.177, R.195, E.197, I.200, T.201 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:R.16, C:Q.27, C:G.147, C:E.162, C:Y.177, C:R.195, C:E.199, C:E.199, C:T.201 Water bridges: C:S.13, C:G.14, C:R.16, C:Q.26, C:V.173, C:T.174, C:I.200, C:T.201 Salt bridges: C:R.16, C:K.163, C:K.163, C:R.195 pi-Cation interactions: C:R.16 UPG.4: 22 residues within 4Å: Chain D: L.9, A.10, G.11, G.12, Q.26, Q.27, Q.83, P.86, D.87, G.88, L.89, L.109, D.111, Y.146, G.147, E.162, K.163, V.173, Y.177, R.195, I.200, T.201 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:G.11, D:Q.26, D:Q.27, D:Q.83, D:Q.83, D:G.88, D:G.147, D:G.147, D:E.162, D:R.195 Water bridges: D:G.12, D:G.110, D:Y.177, D:E.197, D:E.199, D:I.200 Salt bridges: D:K.163, D:K.163, D:R.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barton, W.A. et al., Structure, mechanism and engineering of a nucleotidylyltransferase as a first step toward glycorandomization. Nat.Struct.Biol. (2001)

Release Date

2001-05-09

Peptides

glucose-1-phosphate thymidylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

glucose-1-phosphate thymidylyltransferase

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