SMTL ID : 1ijd.2 (1 other biounit)

Crystallographic Structure of the LH3 Complex from Rhodopseudomonas acidophila strain 7050

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-9-9-mer

Ligands

27 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 24 residues within 4Å: Chain A: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain B: F.23, I.26, A.27, A.30, H.31 Chain Q: I.6, V.10, G.15, V.23, T.26 Ligands: BOG.4, BCL.5, BCL.42, RPA.43, BCL.45 13 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B, 4 interactions with chain Q, Hydrophobic interactions: A:A.24, A:V.34, A:W.40, A:Y.41, A:Y.41, B:A.30, Q:I.6, Q:V.10, Q:V.23, Q:T.26 Hydrogen bonds: A:Y.41, B:H.31 Metal complexes: A:H.31 BCL.2: 18 residues within 4Å: Chain A: M.1, N.2, Q.3, M.19 Chain B: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain C: L.20 Chain D: G.19, V.22 Ligands: RPA.3, BCL.5, BCL.6, RPA.8 8 PLIP interactions: 6 interactions with chain B, 1 interactions with chain D, 1 interactions with chain A, Hydrophobic interactions: B:V.16, B:I.17, B:I.17, B:R.21, B:A.27, D:V.22, A:Q.3 Hydrogen bonds: B:R.21 BCL.5: 23 residues within 4Å: Chain A: V.23, T.26, A.27, V.30, H.31, W.40 Chain B: T.20, F.23, L.24, A.27, H.31, W.40 Chain C: V.23, F.44, L.45 Chain D: V.22, F.23 Ligands: BCL.1, BCL.2, RPA.3, BCL.6, RPA.8, BOG.9 12 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B, 3 interactions with chain C, 2 interactions with chain D, Hydrophobic interactions: A:V.30, A:W.40, B:T.20, B:F.23, B:L.24, C:V.23, C:F.44, C:L.45, D:V.22, D:F.23 Hydrogen bonds: A:H.31 Metal complexes: B:H.31 BCL.6: 24 residues within 4Å: Chain A: I.6, V.10, G.15, V.23, T.26 Chain C: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain D: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.2, RPA.3, BCL.5, BOG.9, BCL.10 13 PLIP interactions: 4 interactions with chain A, 7 interactions with chain C, 2 interactions with chain D, Hydrophobic interactions: A:I.6, A:V.10, A:V.23, A:T.26, C:A.24, C:V.34, C:W.40, C:Y.41, C:Y.41, D:A.30 Hydrogen bonds: C:Y.41, D:H.31 Metal complexes: C:H.31 BCL.7: 18 residues within 4Å: Chain C: M.1, N.2, Q.3, M.19 Chain D: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain E: L.20 Chain F: G.19, V.22 Ligands: RPA.8, BCL.10, BCL.11, RPA.13 8 PLIP interactions: 6 interactions with chain D, 1 interactions with chain C, 1 interactions with chain F, Hydrophobic interactions: D:V.16, D:I.17, D:I.17, D:R.21, D:A.27, C:Q.3, F:V.22 Hydrogen bonds: D:R.21 BCL.10: 23 residues within 4Å: Chain C: V.23, T.26, A.27, V.30, H.31, W.40 Chain D: T.20, F.23, L.24, A.27, H.31, W.40 Chain E: V.23, F.44, L.45 Chain F: V.22, F.23 Ligands: BCL.6, BCL.7, RPA.8, BCL.11, RPA.13, BOG.14 12 PLIP interactions: 3 interactions with chain C, 2 interactions with chain F, 4 interactions with chain D, 3 interactions with chain E, Hydrophobic interactions: C:V.30, C:W.40, F:V.22, F:F.23, D:T.20, D:F.23, D:L.24, E:V.23, E:F.44, E:L.45 Hydrogen bonds: C:H.31 Metal complexes: D:H.31 BCL.11: 24 residues within 4Å: Chain C: I.6, V.10, G.15, V.23, T.26 Chain E: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain F: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.7, RPA.8, BCL.10, BOG.14, BCL.15 13 PLIP interactions: 7 interactions with chain E, 4 interactions with chain C, 2 interactions with chain F, Hydrophobic interactions: E:A.24, E:V.34, E:W.40, E:Y.41, E:Y.41, C:I.6, C:V.10, C:V.23, C:T.26, F:A.30 Hydrogen bonds: E:Y.41, F:H.31 Metal complexes: E:H.31 BCL.12: 18 residues within 4Å: Chain E: M.1, N.2, Q.3, M.19 Chain F: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain G: L.20 Chain H: G.19, V.22 Ligands: RPA.13, BCL.15, BCL.16, RPA.18 8 PLIP interactions: 6 interactions with chain F, 1 interactions with chain H, 1 interactions with chain E, Hydrophobic interactions: F:V.16, F:I.17, F:I.17, F:R.21, F:A.27, H:V.22, E:Q.3 Hydrogen bonds: F:R.21 BCL.15: 23 residues within 4Å: Chain E: V.23, T.26, A.27, V.30, H.31, W.40 Chain F: T.20, F.23, L.24, A.27, H.31, W.40 Chain G: V.23, F.44, L.45 Chain H: V.22, F.23 Ligands: BCL.11, BCL.12, RPA.13, BCL.16, RPA.18, BOG.19 12 PLIP interactions: 4 interactions with chain F, 3 interactions with chain E, 3 interactions with chain G, 2 interactions with chain H, Hydrophobic interactions: F:T.20, F:F.23, F:L.24, E:V.30, E:W.40, G:V.23, G:F.44, G:L.45, H:V.22, H:F.23 Metal complexes: F:H.31 Hydrogen bonds: E:H.31 BCL.16: 24 residues within 4Å: Chain E: I.6, V.10, G.15, V.23, T.26 Chain G: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain H: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.12, RPA.13, BCL.15, BOG.19, BCL.20 13 PLIP interactions: 7 interactions with chain G, 4 interactions with chain E, 2 interactions with chain H, Hydrophobic interactions: G:A.24, G:V.34, G:W.40, G:Y.41, G:Y.41, E:I.6, E:V.10, E:V.23, E:T.26, H:A.30 Hydrogen bonds: G:Y.41, H:H.31 Metal complexes: G:H.31 BCL.17: 18 residues within 4Å: Chain G: M.1, N.2, Q.3, M.19 Chain H: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain I: L.20 Chain J: G.19, V.22 Ligands: RPA.18, BCL.20, BCL.21, RPA.23 8 PLIP interactions: 6 interactions with chain H, 1 interactions with chain J, 1 interactions with chain G, Hydrophobic interactions: H:V.16, H:I.17, H:I.17, H:R.21, H:A.27, J:V.22, G:Q.3 Hydrogen bonds: H:R.21 BCL.20: 23 residues within 4Å: Chain G: V.23, T.26, A.27, V.30, H.31, W.40 Chain H: T.20, F.23, L.24, A.27, H.31, W.40 Chain I: V.23, F.44, L.45 Chain J: V.22, F.23 Ligands: BCL.16, BCL.17, RPA.18, BCL.21, RPA.23, BOG.24 12 PLIP interactions: 4 interactions with chain H, 3 interactions with chain I, 3 interactions with chain G, 2 interactions with chain J, Hydrophobic interactions: H:T.20, H:F.23, H:L.24, I:V.23, I:F.44, I:L.45, G:V.30, G:W.40, J:V.22, J:F.23 Metal complexes: H:H.31 Hydrogen bonds: G:H.31 BCL.21: 24 residues within 4Å: Chain G: I.6, V.10, G.15, V.23, T.26 Chain I: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain J: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.17, RPA.18, BCL.20, BOG.24, BCL.25 13 PLIP interactions: 7 interactions with chain I, 4 interactions with chain G, 2 interactions with chain J, Hydrophobic interactions: I:A.24, I:V.34, I:W.40, I:Y.41, I:Y.41, G:I.6, G:V.10, G:V.23, G:T.26, J:A.30 Hydrogen bonds: I:Y.41, J:H.31 Metal complexes: I:H.31 BCL.22: 18 residues within 4Å: Chain I: M.1, N.2, Q.3, M.19 Chain J: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain K: L.20 Chain L: G.19, V.22 Ligands: RPA.23, BCL.25, BCL.26, RPA.28 8 PLIP interactions: 1 interactions with chain I, 6 interactions with chain J, 1 interactions with chain L, Hydrophobic interactions: I:Q.3, J:V.16, J:I.17, J:I.17, J:R.21, J:A.27, L:V.22 Hydrogen bonds: J:R.21 BCL.25: 23 residues within 4Å: Chain I: V.23, T.26, A.27, V.30, H.31, W.40 Chain J: T.20, F.23, L.24, A.27, H.31, W.40 Chain K: V.23, F.44, L.45 Chain L: V.22, F.23 Ligands: BCL.21, BCL.22, RPA.23, BCL.26, RPA.28, BOG.29 12 PLIP interactions: 4 interactions with chain J, 3 interactions with chain I, 3 interactions with chain K, 2 interactions with chain L, Hydrophobic interactions: J:T.20, J:F.23, J:L.24, I:V.30, I:W.40, K:V.23, K:F.44, K:L.45, L:V.22, L:F.23 Metal complexes: J:H.31 Hydrogen bonds: I:H.31 BCL.26: 24 residues within 4Å: Chain I: I.6, V.10, G.15, V.23, T.26 Chain K: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain L: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.22, RPA.23, BCL.25, BOG.29, BCL.30 13 PLIP interactions: 4 interactions with chain I, 7 interactions with chain K, 2 interactions with chain L, Hydrophobic interactions: I:I.6, I:V.10, I:V.23, I:T.26, K:A.24, K:V.34, K:W.40, K:Y.41, K:Y.41, L:A.30 Hydrogen bonds: K:Y.41, L:H.31 Metal complexes: K:H.31 BCL.27: 18 residues within 4Å: Chain K: M.1, N.2, Q.3, M.19 Chain L: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain M: L.20 Chain N: G.19, V.22 Ligands: RPA.28, BCL.30, BCL.31, RPA.33 8 PLIP interactions: 1 interactions with chain K, 6 interactions with chain L, 1 interactions with chain N, Hydrophobic interactions: K:Q.3, L:V.16, L:I.17, L:I.17, L:R.21, L:A.27, N:V.22 Hydrogen bonds: L:R.21 BCL.30: 23 residues within 4Å: Chain K: V.23, T.26, A.27, V.30, H.31, W.40 Chain L: T.20, F.23, L.24, A.27, H.31, W.40 Chain M: V.23, F.44, L.45 Chain N: V.22, F.23 Ligands: BCL.26, BCL.27, RPA.28, BCL.31, RPA.33, BOG.34 12 PLIP interactions: 3 interactions with chain K, 3 interactions with chain M, 4 interactions with chain L, 2 interactions with chain N, Hydrophobic interactions: K:V.30, K:W.40, M:V.23, M:F.44, M:L.45, L:T.20, L:F.23, L:L.24, N:V.22, N:F.23 Hydrogen bonds: K:H.31 Metal complexes: L:H.31 BCL.31: 24 residues within 4Å: Chain K: I.6, V.10, G.15, V.23, T.26 Chain M: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain N: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.27, RPA.28, BCL.30, BOG.34, BCL.35 13 PLIP interactions: 7 interactions with chain M, 4 interactions with chain K, 2 interactions with chain N, Hydrophobic interactions: M:A.24, M:V.34, M:W.40, M:Y.41, M:Y.41, K:I.6, K:V.10, K:V.23, K:T.26, N:A.30 Hydrogen bonds: M:Y.41, N:H.31 Metal complexes: M:H.31 BCL.32: 18 residues within 4Å: Chain M: M.1, N.2, Q.3, M.19 Chain N: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain O: L.20 Chain P: G.19, V.22 Ligands: RPA.33, BCL.35, BCL.36, RPA.38 8 PLIP interactions: 6 interactions with chain N, 1 interactions with chain M, 1 interactions with chain P, Hydrophobic interactions: N:V.16, N:I.17, N:I.17, N:R.21, N:A.27, M:Q.3, P:V.22 Hydrogen bonds: N:R.21 BCL.35: 23 residues within 4Å: Chain M: V.23, T.26, A.27, V.30, H.31, W.40 Chain N: T.20, F.23, L.24, A.27, H.31, W.40 Chain O: V.23, F.44, L.45 Chain P: V.22, F.23 Ligands: BCL.31, BCL.32, RPA.33, BCL.36, RPA.38, BOG.39 12 PLIP interactions: 2 interactions with chain P, 3 interactions with chain M, 4 interactions with chain N, 3 interactions with chain O, Hydrophobic interactions: P:V.22, P:F.23, M:V.30, M:W.40, N:T.20, N:F.23, N:L.24, O:V.23, O:F.44, O:L.45 Hydrogen bonds: M:H.31 Metal complexes: N:H.31 BCL.36: 24 residues within 4Å: Chain M: I.6, V.10, G.15, V.23, T.26 Chain O: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain P: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.32, RPA.33, BCL.35, BOG.39, BCL.40 13 PLIP interactions: 4 interactions with chain M, 7 interactions with chain O, 2 interactions with chain P, Hydrophobic interactions: M:I.6, M:V.10, M:V.23, M:T.26, O:A.24, O:V.34, O:W.40, O:Y.41, O:Y.41, P:A.30 Hydrogen bonds: O:Y.41, P:H.31 Metal complexes: O:H.31 BCL.37: 18 residues within 4Å: Chain O: M.1, N.2, Q.3, M.19 Chain P: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Chain Q: L.20 Chain R: G.19, V.22 Ligands: RPA.38, BCL.40, BCL.41, RPA.43 8 PLIP interactions: 1 interactions with chain O, 1 interactions with chain R, 6 interactions with chain P, Hydrophobic interactions: O:Q.3, R:V.22, P:V.16, P:I.17, P:I.17, P:R.21, P:A.27 Hydrogen bonds: P:R.21 BCL.40: 23 residues within 4Å: Chain O: V.23, T.26, A.27, V.30, H.31, W.40 Chain P: T.20, F.23, L.24, A.27, H.31, W.40 Chain Q: V.23, F.44, L.45 Chain R: V.22, F.23 Ligands: BCL.36, BCL.37, RPA.38, BCL.41, RPA.43, BOG.44 12 PLIP interactions: 4 interactions with chain P, 3 interactions with chain Q, 2 interactions with chain R, 3 interactions with chain O, Hydrophobic interactions: P:T.20, P:F.23, P:L.24, Q:V.23, Q:F.44, Q:L.45, R:V.22, R:F.23, O:V.30, O:W.40 Metal complexes: P:H.31 Hydrogen bonds: O:H.31 BCL.41: 24 residues within 4Å: Chain O: I.6, V.10, G.15, V.23, T.26 Chain Q: P.17, L.20, G.21, A.24, A.27, H.31, V.34, W.40, Y.41 Chain R: F.23, I.26, A.27, A.30, H.31 Ligands: BCL.37, RPA.38, BCL.40, BOG.44, BCL.45 13 PLIP interactions: 4 interactions with chain O, 7 interactions with chain Q, 2 interactions with chain R, Hydrophobic interactions: O:I.6, O:V.10, O:V.23, O:T.26, Q:A.24, Q:V.34, Q:W.40, Q:Y.41, Q:Y.41, R:A.30 Hydrogen bonds: Q:Y.41, R:H.31 Metal complexes: Q:H.31 BCL.42: 18 residues within 4Å: Chain A: L.20 Chain B: G.19, V.22 Chain Q: M.1, N.2, Q.3, M.19 Chain R: V.16, I.17, T.20, R.21, A.27, A.28, H.31 Ligands: BCL.1, RPA.3, RPA.43, BCL.45 8 PLIP interactions: 1 interactions with chain Q, 6 interactions with chain R, 1 interactions with chain B, Hydrophobic interactions: Q:Q.3, R:V.16, R:I.17, R:I.17, R:R.21, R:A.27, B:V.22 Hydrogen bonds: R:R.21 BCL.45: 23 residues within 4Å: Chain A: V.23, F.44, L.45 Chain B: V.22, F.23 Chain Q: V.23, T.26, A.27, V.30, H.31, W.40 Chain R: T.20, F.23, L.24, A.27, H.31, W.40 Ligands: BCL.1, RPA.3, BOG.4, BCL.41, BCL.42, RPA.43 12 PLIP interactions: 3 interactions with chain Q, 2 interactions with chain B, 4 interactions with chain R, 3 interactions with chain A, Hydrophobic interactions: Q:V.30, Q:W.40, B:V.22, B:F.23, R:T.20, R:F.23, R:L.24, A:V.23, A:F.44, A:L.45 Hydrogen bonds: Q:H.31 Metal complexes: R:H.31

9 x RPA: RHODOPINAL GLUCOSIDE(Non-covalent)

RPA.3: 26 residues within 4Å: Chain A: L.20, V.23, T.26, V.30 Chain B: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain C: L.28, H.31, Y.41 Chain Q: Q.3, K.5, I.6, T.8 Chain R: S.6 Ligands: BCL.2, BCL.5, BCL.6, BCL.42, BCL.45 11 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C, 3 interactions with chain B, 2 interactions with chain Q Hydrophobic interactions: A:L.20, A:V.23, A:T.26, A:V.30, C:L.28, C:H.31, B:H.15, Q:K.5, Q:I.6 Hydrogen bonds: B:Q.8, B:Q.8 RPA.8: 26 residues within 4Å: Chain A: Q.3, K.5, I.6, T.8 Chain B: S.6 Chain C: L.20, V.23, T.26, V.30 Chain D: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain E: L.28, H.31, Y.41 Ligands: BCL.2, BCL.5, BCL.7, BCL.10, BCL.11 11 PLIP interactions: 2 interactions with chain E, 3 interactions with chain D, 4 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: E:L.28, E:H.31, D:H.15, C:L.20, C:V.23, C:T.26, C:V.30, A:K.5, A:I.6 Hydrogen bonds: D:Q.8, D:Q.8 RPA.13: 26 residues within 4Å: Chain C: Q.3, K.5, I.6, T.8 Chain D: S.6 Chain E: L.20, V.23, T.26, V.30 Chain F: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain G: L.28, H.31, Y.41 Ligands: BCL.7, BCL.10, BCL.12, BCL.15, BCL.16 11 PLIP interactions: 2 interactions with chain C, 4 interactions with chain E, 2 interactions with chain G, 3 interactions with chain F Hydrophobic interactions: C:K.5, C:I.6, E:L.20, E:V.23, E:T.26, E:V.30, G:L.28, G:H.31, F:H.15 Hydrogen bonds: F:Q.8, F:Q.8 RPA.18: 26 residues within 4Å: Chain E: Q.3, K.5, I.6, T.8 Chain F: S.6 Chain G: L.20, V.23, T.26, V.30 Chain H: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain I: L.28, H.31, Y.41 Ligands: BCL.12, BCL.15, BCL.17, BCL.20, BCL.21 11 PLIP interactions: 2 interactions with chain I, 3 interactions with chain H, 2 interactions with chain E, 4 interactions with chain G Hydrophobic interactions: I:L.28, I:H.31, H:H.15, E:K.5, E:I.6, G:L.20, G:V.23, G:T.26, G:V.30 Hydrogen bonds: H:Q.8, H:Q.8 RPA.23: 26 residues within 4Å: Chain G: Q.3, K.5, I.6, T.8 Chain H: S.6 Chain I: L.20, V.23, T.26, V.30 Chain J: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain K: L.28, H.31, Y.41 Ligands: BCL.17, BCL.20, BCL.22, BCL.25, BCL.26 11 PLIP interactions: 2 interactions with chain G, 4 interactions with chain I, 2 interactions with chain K, 3 interactions with chain J Hydrophobic interactions: G:K.5, G:I.6, I:L.20, I:V.23, I:T.26, I:V.30, K:L.28, K:H.31, J:H.15 Hydrogen bonds: J:Q.8, J:Q.8 RPA.28: 26 residues within 4Å: Chain I: Q.3, K.5, I.6, T.8 Chain J: S.6 Chain K: L.20, V.23, T.26, V.30 Chain L: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain M: L.28, H.31, Y.41 Ligands: BCL.22, BCL.25, BCL.27, BCL.30, BCL.31 11 PLIP interactions: 2 interactions with chain I, 4 interactions with chain K, 2 interactions with chain M, 3 interactions with chain L Hydrophobic interactions: I:K.5, I:I.6, K:L.20, K:V.23, K:T.26, K:V.30, M:L.28, M:H.31, L:H.15 Hydrogen bonds: L:Q.8, L:Q.8 RPA.33: 26 residues within 4Å: Chain K: Q.3, K.5, I.6, T.8 Chain L: S.6 Chain M: L.20, V.23, T.26, V.30 Chain N: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain O: L.28, H.31, Y.41 Ligands: BCL.27, BCL.30, BCL.32, BCL.35, BCL.36 11 PLIP interactions: 2 interactions with chain K, 4 interactions with chain M, 2 interactions with chain O, 3 interactions with chain N Hydrophobic interactions: K:K.5, K:I.6, M:L.20, M:V.23, M:T.26, M:V.30, O:L.28, O:H.31, N:H.15 Hydrogen bonds: N:Q.8, N:Q.8 RPA.38: 26 residues within 4Å: Chain M: Q.3, K.5, I.6, T.8 Chain N: S.6 Chain O: L.20, V.23, T.26, V.30 Chain P: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Chain Q: L.28, H.31, Y.41 Ligands: BCL.32, BCL.35, BCL.37, BCL.40, BCL.41 11 PLIP interactions: 2 interactions with chain Q, 4 interactions with chain O, 2 interactions with chain M, 3 interactions with chain P Hydrophobic interactions: Q:L.28, Q:H.31, O:L.20, O:V.23, O:T.26, O:V.30, M:K.5, M:I.6, P:H.15 Hydrogen bonds: P:Q.8, P:Q.8 RPA.43: 26 residues within 4Å: Chain A: L.28, H.31, Y.41 Chain O: Q.3, K.5, I.6, T.8 Chain P: S.6 Chain Q: L.20, V.23, T.26, V.30 Chain R: L.4, Q.8, A.9, E.11, L.12, H.15, G.19, T.20, F.23 Ligands: BCL.1, BCL.37, BCL.40, BCL.42, BCL.45 11 PLIP interactions: 2 interactions with chain O, 2 interactions with chain A, 3 interactions with chain R, 4 interactions with chain Q Hydrophobic interactions: O:K.5, O:I.6, A:L.28, A:H.31, R:H.15, Q:L.20, Q:V.23, Q:T.26, Q:V.30 Hydrogen bonds: R:Q.8, R:Q.8

9 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.4: 3 residues within 4Å: Chain B: A.30 Ligands: BCL.1, BCL.45 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.30 Water bridges: B:L.37 BOG.9: 3 residues within 4Å: Chain D: A.30 Ligands: BCL.5, BCL.6 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:A.30 Water bridges: D:L.37 BOG.14: 3 residues within 4Å: Chain F: A.30 Ligands: BCL.10, BCL.11 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:A.30 Water bridges: F:L.37 BOG.19: 3 residues within 4Å: Chain H: A.30 Ligands: BCL.15, BCL.16 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:A.30 Water bridges: H:L.37 BOG.24: 3 residues within 4Å: Chain J: A.30 Ligands: BCL.20, BCL.21 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:A.30 Water bridges: J:L.37 BOG.29: 3 residues within 4Å: Chain L: A.30 Ligands: BCL.25, BCL.26 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:A.30 Water bridges: L:L.37 BOG.34: 3 residues within 4Å: Chain N: A.30 Ligands: BCL.30, BCL.31 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:A.30 Water bridges: N:L.37 BOG.39: 3 residues within 4Å: Chain P: A.30 Ligands: BCL.35, BCL.36 2 PLIP interactions: 2 interactions with chain P Hydrophobic interactions: P:A.30 Water bridges: P:L.37 BOG.44: 3 residues within 4Å: Chain R: A.30 Ligands: BCL.40, BCL.41 2 PLIP interactions: 2 interactions with chain R Hydrophobic interactions: R:A.30 Water bridges: R:L.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McLuskey, K. et al., The crystallographic structure of the B800-820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050. Biochemistry (2001)

Release Date

2001-10-17

Peptides

LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN: ACEGIKMOQ
LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN: BDFHJLNPR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
A

I
C

K
E

M
A

O
C

Q
E

B
B

D
D

F
F

H
B

J
D

L
F

N
B

P
D

R
F

Membrane

We predict this structure to be a membrane protein.
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LIGHT-HARVESTING PROTEIN B-800/820, ALPHA CHAIN

LIGHT-HARVESTING PROTEIN B-800/820, BETA CHAIN

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