SMTL ID : 1ijn.1 (1 other biounit)

Crystal structure of the transthyretin mutant TTR C10A/Y114C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 5 residues within 4Å: Chain A: F.87, C.114 Chain B: A.120, V.122 Chain D: R.21 No protein-ligand interaction detected (PLIP) BME.2: 8 residues within 4Å: Chain A: A.108, A.109, S.117, T.118, T.119 Ligands: BME.3, BME.8, BME.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.117 BME.3: 8 residues within 4Å: Chain C: A.108, A.109, S.117, T.118, T.119 Ligands: BME.2, BME.8, BME.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.117 BME.4: 6 residues within 4Å: Chain A: V.122 Chain B: F.87, P.113, C.114 Chain C: R.21, G.22 No protein-ligand interaction detected (PLIP) BME.5: 9 residues within 4Å: Chain B: A.108, L.110, S.117, T.118, T.119 Chain D: L.110 Ligands: BME.6, BME.11, BME.12 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.118 BME.6: 9 residues within 4Å: Chain B: L.110 Chain D: A.108, L.110, S.117, T.118, T.119 Ligands: BME.5, BME.11, BME.12 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.118 BME.7: 5 residues within 4Å: Chain B: R.21 Chain C: F.87, C.114 Chain D: A.120, V.122 No protein-ligand interaction detected (PLIP) BME.8: 8 residues within 4Å: Chain C: A.108, A.109, S.117, T.118, T.119 Ligands: BME.2, BME.3, BME.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.117 BME.9: 8 residues within 4Å: Chain A: A.108, A.109, S.117, T.118, T.119 Ligands: BME.2, BME.3, BME.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.117 BME.10: 6 residues within 4Å: Chain A: R.21, G.22 Chain C: V.122 Chain D: F.87, P.113, C.114 No protein-ligand interaction detected (PLIP) BME.11: 9 residues within 4Å: Chain B: L.110 Chain D: A.108, L.110, S.117, T.118, T.119 Ligands: BME.5, BME.6, BME.12 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.118 BME.12: 9 residues within 4Å: Chain B: A.108, L.110, S.117, T.118, T.119 Chain D: L.110 Ligands: BME.5, BME.6, BME.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karlsson, A. et al., Cys114-linked dimers of transthyretin are compatible with amyloid formation. Biochemistry (2005)

Release Date

2003-06-03

Peptides

TRANSTHYRETIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

TRANSTHYRETIN

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