SMTL ID : 1ik3.1

LIPOXYGENASE-3 (SOYBEAN) COMPLEX WITH 13(S)-HYDROPEROXY-9(Z),11(E)-OCTADECADIENOIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 8 residues within 4Å: Chain A: H.518, H.523, H.709, N.713, I.857 Ligands: 13S.2, 13R.3, 9OH.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.518, A:H.523, A:H.709

1 x 13S: 13(S)-HYDROPEROXY-9(Z),11(E)-OCTADECADIENOIC ACID(Non-covalent)

13S.2: 25 residues within 4Å: Chain A: L.273, T.274, L.277, V.372, S.510, H.513, Q.514, H.518, W.519, H.523, I.557, L.560, L.565, I.572, F.576, N.713, Q.716, R.726, I.772, L.773, I.857 Ligands: FE.1, 13R.3, 9OH.4, 11O.5 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.277, A:Q.514, A:W.519, A:W.519, A:I.557, A:I.557, A:L.565, A:F.576, A:F.576, A:I.772, A:L.773, A:L.773, A:I.857 Salt bridges: A:H.513, A:R.726

1 x 13R: 13(R)-HYDROPEROXY-9(Z),11(E)-OCTADECADIENOIC ACID(Non-covalent)

13R.3: 24 residues within 4Å: Chain A: L.273, T.274, L.277, V.372, S.510, H.513, Q.514, H.518, W.519, H.523, I.557, L.560, L.565, I.572, F.576, N.713, Q.716, R.726, L.773, I.857 Ligands: FE.1, 13S.2, 9OH.4, 11O.5 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.274, A:L.277, A:L.277, A:Q.514, A:W.519, A:I.557, A:L.560, A:L.565, A:F.576, A:F.576, A:L.773, A:I.857 Salt bridges: A:H.513, A:R.726

1 x 9OH: (TRANS-12,13-EPOXY)-9-HYDROXY-10(E)-OCTADECENOIC ACID(Non-covalent)

9OH.4: 24 residues within 4Å: Chain A: L.273, T.274, L.277, V.372, S.510, H.513, Q.514, H.518, W.519, H.523, I.557, L.560, L.565, I.572, F.576, Q.716, R.726, I.772, L.773, I.857 Ligands: FE.1, 13S.2, 13R.3, 11O.5 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.277, A:L.277, A:Q.514, A:W.519, A:I.557, A:L.560, A:L.565, A:F.576, A:F.576, A:I.772, A:L.773, A:I.857 Hydrogen bonds: A:Q.514 Salt bridges: A:H.513, A:R.726

1 x 11O: (TRANS-12,13-EPOXY)-11-HYDROXY-9(Z)-OCTADECENOIC ACID(Covalent)

11O.5: 23 residues within 4Å: Chain A: L.273, T.274, L.277, V.372, S.510, H.513, Q.514, H.518, W.519, H.523, I.557, L.560, L.565, I.572, F.576, Q.716, G.720, R.726, L.773, I.857 Ligands: 13S.2, 13R.3, 9OH.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.277, A:L.277, A:Q.514, A:W.519, A:I.557, A:L.560, A:L.565, A:I.572, A:F.576, A:L.773, A:I.857, A:I.857 Hydrogen bonds: A:H.518 Salt bridges: A:R.726

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skrzypczak-Jankun, E. et al., Three-dimensional structure of a purple lipoxygenase. J.Am.Chem.Soc. (2001)

Release Date

2001-11-14

Peptides

LIPOXYGENASE-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIPOXYGENASE-3

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