- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 5 residues within 4Å:- Chain A: D.2, F.3, N.4, N.5, N.154
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.3
NAG.3: 2 residues within 4Å:- Chain A: N.65, W.357
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.65
NAG.7: 5 residues within 4Å:- Chain B: D.2, F.3, N.4, N.5, N.154
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.3
NAG.8: 2 residues within 4Å:- Chain B: N.65, W.357
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.65
NAG.12: 5 residues within 4Å:- Chain C: D.2, F.3, N.4, N.5, N.154
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.3
NAG.13: 2 residues within 4Å:- Chain C: N.65, W.357
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.65
NAG.17: 5 residues within 4Å:- Chain D: D.2, F.3, N.4, N.5, N.154
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:F.3
NAG.18: 2 residues within 4Å:- Chain D: N.65, W.357
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.65
- 4 x CA: CALCIUM ION(Non-covalent)
CA.4: 4 residues within 4Å:- Chain A: D.213, G.217, D.244, N.266
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, A:N.266, H2O.1
CA.9: 4 residues within 4Å:- Chain B: D.213, G.217, D.244, N.266
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, B:N.266, H2O.3
CA.14: 4 residues within 4Å:- Chain C: D.213, G.217, D.244, N.266
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, C:N.266, H2O.5
CA.19: 4 residues within 4Å:- Chain D: D.213, G.217, D.244, N.266
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, D:N.266, H2O.7
- 4 x EQP: (1R)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol(Non-covalent)
EQP.5: 17 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, R.75, W.98, S.99, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:I.142
- Hydrogen bonds: A:R.37, A:R.37, A:R.71, A:R.71, A:E.196, A:R.212, A:R.290, A:R.290, A:Y.324
- Water bridges: A:E.38, A:E.38, A:E.197, A:E.197
EQP.10: 17 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, R.75, W.98, S.99, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:I.142
- Hydrogen bonds: B:R.37, B:R.37, B:R.71, B:R.71, B:E.196, B:R.212, B:R.290, B:R.290, B:Y.324
- Water bridges: B:E.38, B:E.38, B:E.197, B:E.197
EQP.15: 17 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, R.75, W.98, S.99, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:I.142
- Hydrogen bonds: C:R.37, C:R.37, C:R.71, C:R.71, C:E.196, C:R.212, C:R.290, C:R.290, C:Y.324
- Water bridges: C:E.38, C:E.38, C:E.197, C:E.197
EQP.20: 17 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, R.75, W.98, S.99, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, R.290, Y.324
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:I.142
- Hydrogen bonds: D:R.37, D:R.37, D:R.71, D:R.71, D:E.196, D:R.212, D:R.290, D:R.290, D:Y.324
- Water bridges: D:E.38, D:E.38, D:E.197, D:E.197
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- White, C.L. et al., A sialic acid-derived phosphonate analog inhibits different strains of influenza virus neuraminidase with different efficiencies. J.Mol.Biol. (1995)
- Release Date
- 1995-02-07
- Peptides
- INFLUENZA A SUBTYPE N9 NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x EQP: (1R)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- White, C.L. et al., A sialic acid-derived phosphonate analog inhibits different strains of influenza virus neuraminidase with different efficiencies. J.Mol.Biol. (1995)
- Release Date
- 1995-02-07
- Peptides
- INFLUENZA A SUBTYPE N9 NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A