- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
CAP.2: 21 residues within 4Å:- Chain A: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain I: E.60, T.65, W.66, N.123
- Ligands: MG.1
30 PLIP interactions:2 interactions with chain I, 28 interactions with chain A- Hydrogen bonds: I:T.65, I:N.123, A:T.173, A:K.175, A:S.379, A:G.381, A:G.403, A:G.404
- Water bridges: A:T.173, A:T.173, A:K.177, A:K.177, A:K.177, A:K.177, A:H.294, A:R.295, A:R.295, A:H.327, A:S.379, A:G.380, A:I.382, A:I.382, A:G.405
- Salt bridges: A:K.175, A:K.175, A:K.177, A:R.295, A:H.327, A:K.334, A:K.334
CAP.6: 21 residues within 4Å:- Chain C: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain K: E.60, T.65, W.66, N.123
- Ligands: MG.5
32 PLIP interactions:29 interactions with chain C, 3 interactions with chain K- Hydrogen bonds: C:T.173, C:K.175, C:S.379, C:G.381, C:G.403, C:G.404, K:T.65, K:N.123
- Water bridges: C:T.173, C:K.177, C:K.177, C:K.177, C:R.295, C:R.295, C:R.295, C:H.327, C:H.327, C:G.329, C:S.379, C:S.379, C:G.380, C:I.382, C:I.382, C:G.405, K:E.60
- Salt bridges: C:K.175, C:K.175, C:K.177, C:R.295, C:H.327, C:K.334, C:K.334
CAP.11: 22 residues within 4Å:- Chain E: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Chain M: E.60, T.65, W.66, N.123
- Ligands: MG.10
33 PLIP interactions:30 interactions with chain E, 3 interactions with chain M- Hydrogen bonds: E:T.173, E:T.173, E:K.175, E:S.379, E:G.381, E:G.403, E:G.404, M:T.65, M:N.123
- Water bridges: E:T.173, E:T.173, E:K.177, E:K.177, E:K.177, E:R.295, E:R.295, E:R.295, E:H.327, E:H.327, E:G.329, E:S.379, E:G.380, E:I.382, E:G.405, E:G.405, M:E.60
- Salt bridges: E:K.175, E:K.175, E:K.177, E:R.295, E:H.327, E:K.334, E:K.334
CAP.15: 21 residues within 4Å:- Chain G: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain O: E.60, T.65, W.66, N.123
- Ligands: MG.14
32 PLIP interactions:2 interactions with chain O, 30 interactions with chain G- Hydrogen bonds: O:T.65, O:N.123, G:T.173, G:K.175, G:H.327, G:S.379, G:G.381, G:G.403, G:G.404
- Water bridges: G:T.173, G:T.173, G:K.177, G:K.177, G:K.177, G:K.177, G:H.294, G:R.295, G:R.295, G:R.295, G:H.327, G:S.379, G:S.379, G:G.380, G:I.382, G:I.382
- Salt bridges: G:K.175, G:K.175, G:K.177, G:R.295, G:H.327, G:K.334, G:K.334
CAP.19: 22 residues within 4Å:- Chain A: E.60, T.65, W.66, N.123
- Chain I: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Ligands: MG.18
31 PLIP interactions:29 interactions with chain I, 2 interactions with chain A- Hydrogen bonds: I:T.173, I:T.173, I:K.175, I:S.379, I:G.381, I:G.403, I:G.404, A:T.65, A:N.123
- Water bridges: I:T.173, I:T.173, I:K.177, I:K.177, I:K.177, I:H.294, I:R.295, I:R.295, I:H.327, I:K.334, I:S.379, I:G.380, I:I.382, I:I.382, I:I.382
- Salt bridges: I:K.175, I:K.175, I:K.177, I:R.295, I:H.327, I:K.334, I:K.334
CAP.24: 22 residues within 4Å:- Chain C: E.60, T.65, W.66, N.123
- Chain K: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Ligands: MG.23
31 PLIP interactions:28 interactions with chain K, 3 interactions with chain C- Hydrogen bonds: K:T.173, K:T.173, K:K.175, K:S.379, K:G.381, K:G.403, K:G.404, C:T.65, C:N.123
- Water bridges: K:T.173, K:T.173, K:K.177, K:K.177, K:K.177, K:R.295, K:R.295, K:H.327, K:H.327, K:S.379, K:G.380, K:I.382, K:I.382, K:I.382, C:E.60
- Salt bridges: K:K.175, K:K.175, K:K.177, K:R.295, K:H.327, K:K.334, K:K.334
CAP.28: 22 residues within 4Å:- Chain E: E.60, T.65, W.66, N.123
- Chain M: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Ligands: MG.27
31 PLIP interactions:29 interactions with chain M, 2 interactions with chain E- Hydrogen bonds: M:T.173, M:K.175, M:S.379, M:G.381, M:G.403, M:G.404, E:T.65, E:N.123
- Water bridges: M:T.173, M:T.173, M:K.177, M:K.177, M:K.177, M:K.177, M:R.295, M:R.295, M:H.327, M:H.327, M:S.379, M:S.379, M:G.380, M:I.382, M:I.382, M:G.405
- Salt bridges: M:K.175, M:K.175, M:K.177, M:R.295, M:H.327, M:K.334, M:K.334
CAP.33: 22 residues within 4Å:- Chain G: E.60, T.65, W.66, N.123
- Chain O: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Ligands: MG.32
30 PLIP interactions:28 interactions with chain O, 2 interactions with chain G- Hydrogen bonds: O:T.173, O:K.175, O:H.327, O:S.379, O:G.381, O:G.403, O:G.404, G:T.65, G:N.123
- Water bridges: O:T.173, O:T.173, O:K.177, O:K.177, O:K.177, O:K.177, O:H.294, O:R.295, O:H.327, O:S.379, O:S.379, O:G.380, O:I.382, O:I.382
- Salt bridges: O:K.175, O:K.175, O:K.177, O:R.295, O:H.327, O:K.334, O:K.334
- 20 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: V.17, K.18, Y.20, Y.24, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.4: 6 residues within 4Å:- Chain A: V.149, I.282, R.285, D.286
- Chain C: E.249, K.252
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain C: V.17, K.18, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain C: L.270, F.274, I.301
- Chain K: L.270, M.297
Ligand excluded by PLIPGOL.9: 5 residues within 4Å:- Chain C: V.149, I.282, R.285, D.286
- Chain E: K.252
Ligand excluded by PLIPGOL.12: 7 residues within 4Å:- Chain E: V.17, K.18, Y.20, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.13: 6 residues within 4Å:- Chain E: V.149, I.282, R.285, D.286
- Chain G: E.249, K.252
Ligand excluded by PLIPGOL.16: 7 residues within 4Å:- Chain G: V.17, K.18, Y.20, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.17: 5 residues within 4Å:- Chain A: K.252
- Chain G: V.149, I.282, R.285, D.286
Ligand excluded by PLIPGOL.20: 7 residues within 4Å:- Chain I: V.17, K.18, Y.20, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.21: 4 residues within 4Å:- Chain A: L.270, I.301
- Chain I: L.270, M.297
Ligand excluded by PLIPGOL.22: 6 residues within 4Å:- Chain I: V.149, I.282, R.285, D.286
- Chain O: E.249, K.252
Ligand excluded by PLIPGOL.25: 6 residues within 4Å:- Chain K: V.17, K.18, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.26: 5 residues within 4Å:- Chain I: K.252
- Chain K: V.149, I.282, R.285, D.286
Ligand excluded by PLIPGOL.29: 7 residues within 4Å:- Chain M: V.17, K.18, Y.20, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.30: 5 residues within 4Å:- Chain E: L.270, F.274, I.301
- Chain M: L.270, M.297
Ligand excluded by PLIPGOL.31: 6 residues within 4Å:- Chain K: E.249, K.252
- Chain M: V.149, I.282, R.285, D.286
Ligand excluded by PLIPGOL.34: 9 residues within 4Å:- Chain O: V.17, K.18, Y.20, Y.24, G.64, T.65, W.66, T.67, T.68
Ligand excluded by PLIPGOL.35: 5 residues within 4Å:- Chain G: L.270, F.274, I.301
- Chain O: L.270, M.297
Ligand excluded by PLIPGOL.36: 6 residues within 4Å:- Chain M: E.249, K.252
- Chain O: V.149, I.282, R.285, D.286
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mizohata, E. et al., Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. J.Mol.Biol. (2002)
- Release Date
- 2002-03-20
- Peptides
- Large subunit of Rubisco: ACEGIKMO
Small subunit of Rubisco: BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
GO
HB
ID
JF
KH
LJ
ML
NN
OP
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
- 20 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mizohata, E. et al., Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. J.Mol.Biol. (2002)
- Release Date
- 2002-03-20
- Peptides
- Large subunit of Rubisco: ACEGIKMO
Small subunit of Rubisco: BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
GO
HB
ID
JF
KH
LJ
ML
NN
OP
P