SMTL ID : 1isi.1

Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: N.79, S.80, L.83, N.160, S.162, E.163, P.164, E.197, P.201 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 9 residues within 4Å: Chain B: N.79, S.80, L.83, N.160, S.162, E.163, P.164, E.197, P.201 No protein-ligand interaction detected (PLIP)

2 x NCA: NICOTINAMIDE(Non-covalent)

NCA.3: 6 residues within 4Å: Chain A: W.77, E.78, F.173, F.174, E.178 Ligands: ENQ.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.173 Hydrogen bonds: A:W.77, A:W.77, A:F.174 NCA.5: 6 residues within 4Å: Chain B: W.77, E.78, F.173, F.174, E.178 Ligands: ENQ.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.173 Hydrogen bonds: B:W.77, B:F.174 Water bridges: B:W.77

2 x ENQ: [[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-imidazo[2,1-f]purin-6-ium-3-yl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-3,4-dihydroxy-5-oxidanidyl-oxolan-2-yl]methyl phosphate(Non-covalent)

ENQ.4: 12 residues within 4Å: Chain A: E.5, W.77, H.81, L.97, A.106, D.107, F.108, W.140, S.144, F.173, E.178 Ligands: NCA.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:E.5, A:E.5, A:A.106, A:F.108, A:F.108 Water bridges: A:A.106, A:L.109, A:E.178 pi-Stacking: A:W.77, A:W.140, A:W.140 ENQ.6: 12 residues within 4Å: Chain B: E.5, W.77, H.81, L.97, A.106, D.107, F.108, W.140, S.144, F.173, E.178 Ligands: NCA.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:E.5, B:A.106, B:F.108 Water bridges: B:N.79, B:A.106, B:L.109, B:E.178 pi-Stacking: B:W.77, B:W.140, B:W.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto-Katayama, S. et al., Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities. J.Mol.Biol. (2002)

Release Date

2002-03-13

Peptides

bone marrow stromal cell antigen 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

bone marrow stromal cell antigen 1

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