SMTL ID : 1ivo.1

Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: S.418, N.420, K.443 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: Q.28, N.32, N.33 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.33 NAG.3: 3 residues within 4Å: Chain A: S.92, F.148, N.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.92, A:N.151 NAG.4: 2 residues within 4Å: Chain A: Q.139, N.172 No protein-ligand interaction detected (PLIP) NAG.5: 11 residues within 4Å: Chain A: I.316, F.321, S.324, S.326, I.327, N.328, T.330, N.331, I.332, T.358, T.360 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.316 Hydrogen bonds: A:N.328, A:N.328, A:N.331, A:N.331, A:N.331 Water bridges: A:S.326 NAG.6: 2 residues within 4Å: Chain A: K.311, N.337 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.311 NAG.7: 2 residues within 4Å: Chain B: R.29, N.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.33 NAG.8: 3 residues within 4Å: Chain B: S.92, F.148, N.151 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.92 NAG.9: 10 residues within 4Å: Chain B: F.321, S.324, S.326, I.327, N.328, T.330, N.331, I.332, T.358, T.360 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.327 Hydrogen bonds: B:S.324, B:S.326, B:N.328, B:N.331, B:N.331, B:T.358 Water bridges: B:N.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogiso, H. et al., Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains. Cell(Cambridge,Mass.) (2002)

Release Date

2002-10-16

Peptides

Epidermal Growth Factor Receptor: AB
Epidermal growth factor: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Epidermal Growth Factor Receptor

Epidermal growth factor

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