SMTL ID : 1ivy.1

PHYSIOLOGICAL DIMER HPP PRECURSOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.1: 5 residues within 4Å: Chain A: A.115, N.117, E.120, R.343, L.345 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.345 Hydrogen bonds: A:A.115, A:N.117, A:R.343

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain B: N.117, E.120, L.345 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: P.77, N.305, T.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.77 Water bridges: A:A.308, A:A.308 NAG.4: 5 residues within 4Å: Chain B: P.77, G.255, N.305, T.307, A.308 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.77, B:N.305 Water bridges: B:A.308, B:A.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudenko, G. et al., Three-dimensional structure of the human 'protective protein': structure of the precursor form suggests a complex activation mechanism. Structure (1995)

Release Date

1997-04-21

Peptides

HUMAN PROTECTIVE PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HUMAN PROTECTIVE PROTEIN