SMTL ID : 1j04.2 (1 other biounit)

Structural mechanism of enzyme mistargeting in hereditary kidney stone disease in vitro

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x AOA: (AMINOOXY)ACETIC ACID(Non-covalent)

AOA.1: 7 residues within 4Å: Chain A: P.28, G.29, K.209, M.348, R.360 Chain B: S.48, Y.260 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:P.28, B:S.48 Salt bridges: A:R.360 AOA.9: 7 residues within 4Å: Chain A: S.48, Y.260 Chain B: P.28, G.29, K.209, M.348, R.360 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.28, A:S.48 Salt bridges: B:R.360

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: L.24, F.343, D.344 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.22, A:F.343 GOL.3: 5 residues within 4Å: Chain A: Q.290, A.294, T.369, R.370, E.371 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.290, A:Q.290, A:R.370, A:E.371, A:E.371 GOL.4: 7 residues within 4Å: Chain A: P.17, L.18, S.19 Chain B: D.52, Q.55, I.56, E.59 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.52, B:D.52, B:Q.55, A:P.17, A:S.19 GOL.5: 5 residues within 4Å: Chain A: I.107, Q.110, R.111, D.114 Chain B: W.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.107, A:R.111 GOL.6: 3 residues within 4Å: Chain A: P.34, L.278, C.366 No protein-ligand interaction detected (PLIP) GOL.7: 4 residues within 4Å: Chain A: R.170, D.196, R.197 Chain B: L.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.170, A:R.170, A:D.196 GOL.8: 3 residues within 4Å: Chain A: Q.137, E.138, E.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.141 GOL.10: 3 residues within 4Å: Chain B: L.24, F.343, D.344 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.22, B:F.343 GOL.11: 5 residues within 4Å: Chain B: Q.290, A.294, T.369, R.370, E.371 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.290, B:Q.290, B:R.370, B:E.371, B:E.371 GOL.12: 7 residues within 4Å: Chain A: D.52, Q.55, I.56, E.59 Chain B: P.17, L.18, S.19 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.52, A:Q.55, B:P.17, B:S.19 GOL.13: 5 residues within 4Å: Chain A: W.246 Chain B: I.107, Q.110, R.111, D.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.107, B:R.111 GOL.14: 3 residues within 4Å: Chain B: P.34, L.278, C.366 No protein-ligand interaction detected (PLIP) GOL.15: 4 residues within 4Å: Chain A: L.7 Chain B: R.170, D.196, R.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.170, B:R.170, B:D.196 GOL.16: 3 residues within 4Å: Chain B: Q.137, E.138, E.141 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Djordjevic, S. et al., Structural implications of a G170R mutation of alanine:glyoxylate aminotransferase that is associated with peroxisome-to-mitochondrion mistargeting. Acta Crystallogr.,Sect.F (2010)

Release Date

2003-11-11

Peptides

alanine--glyoxylate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

alanine--glyoxylate aminotransferase

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