SMTL ID : 1j05.3 (2 other biounits)

The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-oligomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain B: Y.33, R.50, D.52, N.55, N.57 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.33, B:N.55, B:N.57 Water bridges: B:R.50, B:R.50 Salt bridges: B:R.50 PO4.3: 5 residues within 4Å: Chain D: Y.33, R.50, D.52, N.55, N.57 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Y.33, D:D.52, D:N.55, D:N.57 Water bridges: D:R.50, D:R.50 Salt bridges: D:R.50

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Q.41, K.49, P.63, R.65, F.66, D.85, D.86 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Q.41, A:K.49, A:R.65, A:D.85 Water bridges: C:R.18 GOL.4: 6 residues within 4Å: Chain A: P.44 Chain C: G.70, S.71, R.72, T.73, D.74 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.71, C:T.73, C:T.73, C:D.74, C:D.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kondo, H. et al., The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment. To be Published

Release Date

2003-12-16

Peptides

anti-CEA mAb T84.66, light chain: AC
anti-CEA mAb T84.66, heavy chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
L

B
B

D
H

anti-CEA mAb T84.66, light chain

anti-CEA mAb T84.66, heavy chain

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