SMTL ID : 1j2g.1

Crystal structure of Urate oxidase from Bacillus SP. TB-90 co-crystallized with 8-Azaxanthine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain B: R.298 Chain D: R.298 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Salt bridges: D:R.298, B:R.298 SO4.2: 1 residues within 4Å: Chain A: K.106 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.106 SO4.3: 2 residues within 4Å: Chain A: T.31 Chain D: R.133 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:T.31 Salt bridges: D:R.133 SO4.4: 2 residues within 4Å: Chain A: R.298 Chain C: R.298 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Salt bridges: A:R.298, C:R.298

4 x AZA: 8-AZAXANTHINE(Non-covalent)

AZA.5: 12 residues within 4Å: Chain A: F.184, L.195, R.201, S.248, I.249, Q.250, N.276, Q.304 Chain B: Y.11, V.70, A.72, T.73 14 PLIP interactions: 5 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:T.73, B:D.74, A:R.201, A:R.201, A:I.249, A:Q.250, A:Q.250, A:N.276, A:Q.304 Water bridges: B:K.13, B:T.73, B:T.73 pi-Stacking: A:F.184, A:F.184 AZA.6: 13 residues within 4Å: Chain A: Y.11, V.70, A.72, T.73, D.74 Chain B: F.184, L.195, R.201, S.248, I.249, Q.250, N.276, Q.304 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.201, B:R.201, B:I.249, B:Q.250, B:Q.250, B:N.276, B:Q.304, A:T.73, A:D.74 pi-Stacking: B:F.184, B:F.184 Water bridges: A:T.73, A:T.73 AZA.7: 12 residues within 4Å: Chain C: F.184, L.195, R.201, S.248, I.249, Q.250, N.276 Chain D: Y.11, V.70, A.72, T.73, D.74 11 PLIP interactions: 9 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.201, C:R.201, C:I.249, C:Q.250, C:Q.250, C:N.276, C:Q.304, D:T.73, D:D.74 pi-Stacking: C:F.184, C:F.184 AZA.8: 11 residues within 4Å: Chain C: Y.11, V.70, A.72, T.73 Chain D: F.184, L.195, R.201, S.248, I.249, Q.250, N.276 12 PLIP interactions: 2 interactions with chain C, 10 interactions with chain D Hydrogen bonds: C:T.73, C:D.74, D:R.201, D:R.201, D:I.249, D:Q.250, D:Q.250, D:N.276 Water bridges: D:Q.304, D:Q.304 pi-Stacking: D:F.184, D:F.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hibi, T. et al., Crystal structure of urate oxidase from Bacillus SP. To be Published

Release Date

2004-06-15

Peptides

Uricase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Uricase