SMTL ID : 1j2j.1

Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.16, T.33 Ligands: GTP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.16, A:T.33, H2O.1, H2O.1

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: R.4, T.49, W.51 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain B: R.15 Ligand excluded by PLIP

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.3: 20 residues within 4Å: Chain A: L.10, D.11, A.12, A.13, G.14, K.15, T.16, T.17, T.30, P.32, T.33, G.54, G.55, N.111, K.112, D.114, L.115, C.144, A.145 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:A.12, A:A.13, A:G.14, A:K.15, A:T.16, A:T.16, A:T.17, A:T.17, A:T.30, A:T.33, A:G.55, A:N.111, A:K.112, A:K.112, A:A.145 Water bridges: A:T.17, A:T.30, A:T.33, A:T.33, A:L.56, A:L.56 Salt bridges: A:K.15, A:K.15, A:D.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shiba, T. et al., Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport. NAT.STRUCT.BIOL. (2003)

Release Date

2003-05-06

Peptides

ADP-ribosylation factor 1: A
ADP-ribosylation factor binding protein GGA1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-ribosylation factor 1

ADP-ribosylation factor binding protein GGA1

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