- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: E.34, D.45, H.120
- Ligands: ZN.1
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.34, A:D.45, A:H.120, H2O.1, H2O.1
MN.6: 4 residues within 4Å:- Chain B: E.34, D.45, H.120
- Ligands: ZN.5
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.34, B:D.45, B:H.120, H2O.11, H2O.11
MN.10: 4 residues within 4Å:- Chain C: E.34, D.45, H.120
- Ligands: ZN.9
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.34, C:D.45, C:H.120, H2O.20, H2O.20
MN.14: 4 residues within 4Å:- Chain D: E.34, D.45, H.120
- Ligands: ZN.13
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.34, D:D.45, D:H.120, H2O.28, H2O.28
MN.17: 4 residues within 4Å:- Chain E: E.34, D.45, H.120
- Ligands: ZN.16
5 PLIP interactions:3 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:E.34, E:D.45, E:H.120, H2O.37, H2O.37
MN.20: 4 residues within 4Å:- Chain F: E.34, D.45, H.120
- Ligands: ZN.19
5 PLIP interactions:3 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:E.34, F:D.45, F:H.120, H2O.45, H2O.45
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: A.51, K.54, R.55, Y.191
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.191
- Salt bridges: A:K.54, A:R.55
SO4.4: 4 residues within 4Å:- Chain A: R.113, K.147, E.256, F.257
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.113, A:K.147
SO4.7: 4 residues within 4Å:- Chain B: A.51, K.54, R.55, Y.191
5 PLIP interactions:5 interactions with chain B- Water bridges: B:Y.191, B:Y.191, B:Y.191
- Salt bridges: B:K.54, B:R.55
SO4.8: 4 residues within 4Å:- Chain B: R.113, K.147, E.256, F.257
3 PLIP interactions:3 interactions with chain B- Water bridges: B:K.147
- Salt bridges: B:R.113, B:K.147
SO4.11: 4 residues within 4Å:- Chain C: A.51, K.54, R.55, Y.191
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Y.191
- Water bridges: C:Y.191, C:Y.191
- Salt bridges: C:K.54, C:R.55
SO4.12: 4 residues within 4Å:- Chain C: R.113, K.147, E.256, F.257
2 PLIP interactions:2 interactions with chain C- Salt bridges: C:R.113, C:K.147
SO4.15: 4 residues within 4Å:- Chain D: A.51, K.54, R.55, Y.191
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.191, D:Y.191
- Salt bridges: D:K.54, D:R.55
SO4.18: 4 residues within 4Å:- Chain E: A.51, K.54, R.55, Y.191
4 PLIP interactions:4 interactions with chain E- Water bridges: E:Y.191, E:Y.191
- Salt bridges: E:K.54, E:R.55
SO4.21: 4 residues within 4Å:- Chain F: A.51, K.54, R.55, Y.191
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:Y.191, F:Y.191
- Salt bridges: F:K.54, F:R.55
SO4.22: 5 residues within 4Å:- Chain F: R.113, K.147, E.256, F.257, P.258
2 PLIP interactions:2 interactions with chain F- Salt bridges: F:R.113, F:K.147
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshimoto, T. et al., Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism. J.Mol.Biol. (2004)
- Release Date
- 2004-01-27
- Peptides
- creatinine amidohydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshimoto, T. et al., Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism. J.Mol.Biol. (2004)
- Release Date
- 2004-01-27
- Peptides
- creatinine amidohydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F