This entry has been superseded by
5TIQ
on Dec. 21, 2017, midnight.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x NAG: SUGAR (N-ACETYL-D-GLUCOSAMINE)(Non-covalent)
- 36 x MAN: SUGAR (ALPHA-D-MANNOSE)(Non-functional Binders)(Non-covalent)
MAN.2: 4 residues within 4Å:- Ligands: NAG.1, MAN.4, MAN.5, NDG.13
Protein-ligand interaction information (PLIP) not availableMAN.3: 2 residues within 4Å:- Ligands: NAG.1, MAN.4
Protein-ligand interaction information (PLIP) not availableMAN.4: 6 residues within 4Å:- Chain A: T.290, A.291
- Ligands: NAG.1, MAN.2, MAN.3, MAN.5
Protein-ligand interaction information (PLIP) not availableMAN.5: 2 residues within 4Å:- Ligands: MAN.2, MAN.4
Protein-ligand interaction information (PLIP) not availableMAN.6: 8 residues within 4Å:- Chain A: N.81, G.82, N.138, L.140
- Ligands: NDG.7, MAN.8, MAN.10, MAN.34
Protein-ligand interaction information (PLIP) not availableMAN.8: 3 residues within 4Å:- Ligands: MAN.6, MAN.11, MAN.34
Protein-ligand interaction information (PLIP) not availableMAN.10: 3 residues within 4Å:- Ligands: MAN.6, NDG.7, MAN.11
Protein-ligand interaction information (PLIP) not availableMAN.11: 4 residues within 4Å:- Chain A: A.292
- Ligands: NDG.7, MAN.8, MAN.10
Protein-ligand interaction information (PLIP) not availableMAN.14: 1 residues within 4Å:- Ligands: NDG.13
Protein-ligand interaction information (PLIP) not availableMAN.15: 3 residues within 4Å:- Ligands: NAG.1, MAN.44, MAN.46
Protein-ligand interaction information (PLIP) not availableMAN.16: 6 residues within 4Å:- Chain A: A.394, G.398
- Chain C: L.140, V.141
- Ligands: NAG.12, MAN.17
Protein-ligand interaction information (PLIP) not availableMAN.17: 2 residues within 4Å:- Ligands: NAG.12, MAN.16
Protein-ligand interaction information (PLIP) not availableMAN.21: 4 residues within 4Å:- Ligands: NAG.20, MAN.23, MAN.24, NDG.32
Protein-ligand interaction information (PLIP) not availableMAN.22: 2 residues within 4Å:- Ligands: NAG.20, MAN.23
Protein-ligand interaction information (PLIP) not availableMAN.23: 6 residues within 4Å:- Chain B: T.290, A.291
- Ligands: NAG.20, MAN.21, MAN.22, MAN.24
Protein-ligand interaction information (PLIP) not availableMAN.24: 2 residues within 4Å:- Ligands: MAN.21, MAN.23
Protein-ligand interaction information (PLIP) not availableMAN.25: 8 residues within 4Å:- Chain B: N.81, G.82, N.138, L.140
- Ligands: NDG.26, MAN.27, MAN.29, MAN.53
Protein-ligand interaction information (PLIP) not availableMAN.27: 3 residues within 4Å:- Ligands: MAN.25, MAN.30, MAN.53
Protein-ligand interaction information (PLIP) not availableMAN.29: 3 residues within 4Å:- Ligands: MAN.25, NDG.26, MAN.30
Protein-ligand interaction information (PLIP) not availableMAN.30: 4 residues within 4Å:- Chain B: A.292
- Ligands: NDG.26, MAN.27, MAN.29
Protein-ligand interaction information (PLIP) not availableMAN.33: 1 residues within 4Å:- Ligands: NDG.32
Protein-ligand interaction information (PLIP) not availableMAN.34: 3 residues within 4Å:- Ligands: MAN.6, MAN.8, NAG.20
Protein-ligand interaction information (PLIP) not availableMAN.35: 6 residues within 4Å:- Chain A: L.140, V.141
- Chain B: A.394, G.398
- Ligands: NAG.31, MAN.36
Protein-ligand interaction information (PLIP) not availableMAN.36: 2 residues within 4Å:- Ligands: NAG.31, MAN.35
Protein-ligand interaction information (PLIP) not availableMAN.40: 4 residues within 4Å:- Ligands: NAG.39, MAN.42, MAN.43, NDG.51
Protein-ligand interaction information (PLIP) not availableMAN.41: 2 residues within 4Å:- Ligands: NAG.39, MAN.42
Protein-ligand interaction information (PLIP) not availableMAN.42: 6 residues within 4Å:- Chain C: T.290, A.291
- Ligands: NAG.39, MAN.40, MAN.41, MAN.43
Protein-ligand interaction information (PLIP) not availableMAN.43: 2 residues within 4Å:- Ligands: MAN.40, MAN.42
Protein-ligand interaction information (PLIP) not availableMAN.44: 8 residues within 4Å:- Chain C: N.81, G.82, N.138, L.140
- Ligands: MAN.15, NDG.45, MAN.46, MAN.48
Protein-ligand interaction information (PLIP) not availableMAN.46: 3 residues within 4Å:- Ligands: MAN.15, MAN.44, MAN.49
Protein-ligand interaction information (PLIP) not availableMAN.48: 3 residues within 4Å:- Ligands: MAN.44, NDG.45, MAN.49
Protein-ligand interaction information (PLIP) not availableMAN.49: 4 residues within 4Å:- Chain C: A.292
- Ligands: NDG.45, MAN.46, MAN.48
Protein-ligand interaction information (PLIP) not availableMAN.52: 1 residues within 4Å:- Ligands: NDG.51
Protein-ligand interaction information (PLIP) not availableMAN.53: 3 residues within 4Å:- Ligands: MAN.25, MAN.27, NAG.39
Protein-ligand interaction information (PLIP) not availableMAN.54: 6 residues within 4Å:- Chain B: L.140, V.141
- Chain C: A.394, G.398
- Ligands: NAG.50, MAN.55
Protein-ligand interaction information (PLIP) not availableMAN.55: 2 residues within 4Å:- Ligands: NAG.50, MAN.54
Protein-ligand interaction information (PLIP) not available- 6 x NDG: SUGAR (2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE)(Non-covalent)
NDG.7: 7 residues within 4Å:- Chain A: G.82, G.83, N.138
- Ligands: MAN.6, NAG.9, MAN.10, MAN.11
Protein-ligand interaction information (PLIP) not availableNDG.13: 5 residues within 4Å:- Chain A: D.389, A.390, N.406
- Ligands: MAN.2, MAN.14
Protein-ligand interaction information (PLIP) not availableNDG.26: 7 residues within 4Å:- Chain B: G.82, G.83, N.138
- Ligands: MAN.25, NAG.28, MAN.29, MAN.30
Protein-ligand interaction information (PLIP) not availableNDG.32: 5 residues within 4Å:- Chain B: D.389, A.390, N.406
- Ligands: MAN.21, MAN.33
Protein-ligand interaction information (PLIP) not availableNDG.45: 7 residues within 4Å:- Chain C: G.82, G.83, N.138
- Ligands: MAN.44, NAG.47, MAN.48, MAN.49
Protein-ligand interaction information (PLIP) not availableNDG.51: 5 residues within 4Å:- Chain C: D.389, A.390, N.406
- Ligands: MAN.40, MAN.52
Protein-ligand interaction information (PLIP) not available- 6 x HG: MERCURY (II) ION(Non-covalent)
HG.18: 6 residues within 4Å:- Chain A: P.241, S.242, A.243, C.386, N.406, T.409
Protein-ligand interaction information (PLIP) not availableHG.19: 5 residues within 4Å:- Chain A: L.320, F.356, C.369, F.371, I.374
Protein-ligand interaction information (PLIP) not availableHG.37: 6 residues within 4Å:- Chain B: P.241, S.242, A.243, C.386, N.406, T.409
Protein-ligand interaction information (PLIP) not availableHG.38: 5 residues within 4Å:- Chain B: L.320, F.356, C.369, F.371, I.374
Protein-ligand interaction information (PLIP) not availableHG.56: 6 residues within 4Å:- Chain C: P.241, S.242, A.243, C.386, N.406, T.409
Protein-ligand interaction information (PLIP) not availableHG.57: 5 residues within 4Å:- Chain C: L.320, F.356, C.369, F.371, I.374
Protein-ligand interaction information (PLIP) not available- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nandhagopal, N. et al., The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus. Proc.Natl.Acad.Sci.USA (2002)
- Release Date
- 2002-11-20
- Peptides
- Major capsid protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
SMTL ID : 1j5q.3 (2 other biounits)
The Structure and Evolution of the Major Capsid Protein of a Large, Lipid-containing, DNA virus.
Major capsid protein
Toggle Identical (ABC)Related Entries With Identical Sequence
6ncl.30 | 6ncl.31 | 6ncl.32 | 6ncl.33 | 6ncl.34 | 6ncl.35 | 6ncl.36 | 6ncl.37 | 6ncl.38 | 6ncl.39 | 6ncl.40 | 6ncl.41 | 6ncl.42 | 6ncl.43 | 6ncl.44 | 6ncl.45 | 6ncl.46 | 6ncl.47 | 6ncl.48 | 6ncl.49 | 6ncl.50 | 6ncl.51 | 6ncl.52 | 6ncl.53 | 6ncl.54 | 6ncl.55 | 6ncl.56 | 6ncl.57 | 6ncl.58 | 6ncl.59 more...less...6ncl.60 | 6ncl.61 | 6ncl.62 | 6ncl.63 | 6ncl.64 | 6ncl.65 | 6ncl.66 | 6ncl.67 | 6ncl.68 | 6ncl.69 | 6ncl.70 | 6ncl.71 | 6ncl.72 | 6ncl.73 | 6ncl.74 | 6ncl.75 | 6ncl.76 | 6ncl.77 | 6ncl.78 | 6ncl.79 | 6ncl.80 | 6ncl.81 | 6ncl.82 | 6ncl.83 | 6ncl.84 | 6ncl.85 | 6ncl.86 | 6ncl.87 | 6ncl.88 | 6ncl.89 | 6ncl.90 | 6ncl.91 | 6ncl.92 | 6ncl.93 | 6ncl.94 | 6ncl.95 | 6ncl.96 | 6ncl.97 | 6ncl.98 | 6ncl.99 | 6ncl.100 | 6ncl.101 | 6ncl.102 | 6ncl.103 | 6ncl.104 | 6ncl.105 | 6ncl.106 | 6ncl.107 | 6ncl.108 | 6ncl.109 | 6ncl.110 | 6ncl.111 | 6ncl.112 | 6ncl.113 | 8h2i.1 | 8h2i.2 | 8h2i.3 | 8h2i.4 | 8h2i.5 | 8h2i.6 | 8h2i.7 | 8h2i.8 | 8h2i.9 | 8h2i.10 | 8h2i.11 | 8h2i.12 | 8h2i.13 | 8h2i.14 | 8h2i.15 | 8h2i.16 | 8h2i.17 | 8h2i.18 | 8h2i.19 | 8h2i.20 | 8h2i.21 | 8h2i.22 | 8h2i.23 | 8h2i.24 | 8h2i.25 | 8h2i.26 | 8h2i.27 | 8h2i.28 | 8h2i.29 | 8h2i.30 | 8h2i.31 | 8h2i.32 | 8h2i.33 | 8h2i.34 | 8h2i.35 | 8h2i.36 | 8h2i.37 | 8h2i.38 | 8h2i.39 | 8h2i.40 | 8h2i.41 | 8h2i.42 | 8h2i.43 | 8h2i.44 | 8h2i.45 | 8h2i.46 | 8h2i.47 | 8h2i.48 | 8h2i.49 | 8h2i.50 | 8h2i.51 | 8h2i.52 | 8h2i.53 | 8h2i.54 | 8h2i.55 | 8h2i.56 | 8h2i.57 | 8h2i.58 | 8h2i.59 | 8h2i.60 | 8h2i.61 | 8h2i.62 | 8h2i.63 | 8h2i.64 | 8h2i.65 | 8h2i.66 | 8h2i.67 | 8h2i.68 | 8h2i.69 | 8h2i.70 | 8h2i.71 | 8h2i.72