SMTL ID : 1j6x.1

CRYSTAL STRUCTURE OF HELICOBACTER PYLORI LUXS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.55, H.59, C.122, H.128 Chain B: C.80 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.55, A:H.59, A:C.122 ZN.3: 5 residues within 4Å: Chain A: C.80 Chain B: H.55, H.59, C.122, H.128 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.55, B:H.59, B:C.122, H2O.1

2 x MET: METHIONINE(Non-covalent)

MET.2: 10 residues within 4Å: Chain A: E.58, H.59, A.62, R.66, D.74, W.75, S.76 Chain B: V.5, F.8, K.36 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.74, A:D.74, A:W.75 Water bridges: A:E.58 Salt bridges: A:R.66, B:K.36 MET.4: 11 residues within 4Å: Chain A: V.5, S.7, F.8, K.36, Y.85 Chain B: E.58, A.62, R.66, D.74, W.75, S.76 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:K.36 Salt bridges: A:K.36, B:R.66 Hydrogen bonds: B:D.74, B:W.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, H.A. et al., A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs. Structure (2001)

Release Date

2001-06-08

Peptides

AUTOINDUCER-2 PRODUCTION PROTEIN LUXS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AUTOINDUCER-2 PRODUCTION PROTEIN LUXS