SMTL ID : 1j70.2 (1 other biounit)

CRYSTAL STRUCTURE OF YEAST ATP SULFURYLASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: Q.198, T.199, R.200, M.266, H.277, H.295, A.296 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.198, A:R.200, A:A.296 Water bridges: A:R.200, A:N.201, A:H.295 Salt bridges: A:R.200, A:H.295 PO4.4: 7 residues within 4Å: Chain B: Q.198, T.199, R.200, M.266, H.277, H.295, A.296 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.198, B:R.200, B:A.296 Water bridges: B:R.200, B:N.201, B:H.295 Salt bridges: B:R.200, B:H.295 PO4.7: 7 residues within 4Å: Chain C: Q.198, T.199, R.200, M.266, H.277, H.295, A.296 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Q.198, C:R.200, C:A.296 Water bridges: C:R.200, C:N.201, C:H.295 Salt bridges: C:R.200, C:H.295 PO4.10: 7 residues within 4Å: Chain D: Q.198, T.199, R.200, M.266, H.277, H.295, A.296 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Q.198, D:R.200, D:A.296 Water bridges: D:R.200, D:N.201 Salt bridges: D:R.200, D:H.295 PO4.13: 7 residues within 4Å: Chain E: Q.198, T.199, R.200, M.266, H.277, H.295, A.296 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:Q.198, E:R.200, E:A.296 Water bridges: E:R.200, E:N.201 Salt bridges: E:R.200, E:H.295 PO4.16: 7 residues within 4Å: Chain F: Q.198, T.199, R.200, M.266, H.277, H.295, A.296 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:Q.198, F:R.200, F:A.296 Water bridges: F:R.200, F:N.201 Salt bridges: F:R.200, F:H.295

12 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.41, P.42, R.43, Y.147 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.43 NA.3: 4 residues within 4Å: Chain A: E.435, H.436, N.437, N.460 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.436, A:H.436, A:N.437, A:N.460 NA.5: 4 residues within 4Å: Chain B: T.41, P.42, R.43, Y.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.43, B:Y.147 NA.6: 4 residues within 4Å: Chain B: E.435, H.436, N.437, N.460 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.436, B:H.436, B:N.437, B:N.460 NA.8: 4 residues within 4Å: Chain C: T.41, P.42, R.43, Y.147 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.43, C:Y.147 NA.9: 4 residues within 4Å: Chain C: E.435, H.436, N.437, N.460 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.436, C:H.436, C:N.437, C:N.460 NA.11: 4 residues within 4Å: Chain D: T.41, P.42, R.43, Y.147 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.43, D:Y.147, D:Y.147 NA.12: 4 residues within 4Å: Chain D: E.435, H.436, N.437, N.460 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:H.436, D:H.436, D:N.437, D:N.460 NA.14: 4 residues within 4Å: Chain E: T.41, P.42, R.43, Y.147 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.43, E:Y.147 NA.15: 4 residues within 4Å: Chain E: E.435, H.436, N.437, N.460 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:H.436, E:H.436, E:N.437, E:N.460 NA.17: 4 residues within 4Å: Chain F: T.41, P.42, R.43, Y.147 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.43, F:Y.147 NA.18: 4 residues within 4Å: Chain F: E.435, H.436, N.437, N.460 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:H.436, F:H.436, F:N.437, F:N.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lalor, D.J. et al., Structural and functional analysis of a truncated form of Saccharomyces cerevisiae ATP sulfurylase: C-terminal domain essential for oligomer formation but not for activity. Protein Eng. (2003)

Release Date

2003-06-17

Peptides

ATP SULPHURYLASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

D
C

E
C

F
C

ATP SULPHURYLASE

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