SMTL ID : 1j7k.1

THERMOTOGA MARITIMA RUVB P216G MUTANT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: G.278, L.279, P.311, G.313, R.314 Ligands: CO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.279 Water bridges: A:N.280, A:N.280 ACT.2: 2 residues within 4Å: Chain A: F.260, Y.297 1 PLIP interactions: 1 interactions with chain A Water bridges: A:F.260

1 x CO: COBALT (II) ION(Non-functional Binders)

CO.3: 1 residues within 4Å: Ligands: ACT.1 3 PLIP interactions: 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: ACT.1, H2O.10, H2O.11

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 18 residues within 4Å: Chain A: L.19, R.20, P.21, E.26, F.27, I.28, P.60, G.61, L.62, G.63, K.64, T.65, T.66, Y.180, I.188, G.216, R.217, I.220 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:E.26, A:I.28, A:G.61, A:G.61, A:L.62, A:G.63, A:K.64, A:T.65, A:T.65, A:T.66, A:T.66, A:Y.180, A:G.216, A:R.217 Water bridges: A:K.64, A:K.64, A:T.65, A:R.217, A:R.217, A:R.217 Salt bridges: A:R.20, A:R.20, A:K.64, A:R.217, A:R.217, A:R.217

1 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.5: 1 residues within 4Å: Chain A: E.270 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.270 Hydrogen bonds: A:E.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Putnam, C.D. et al., Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol. (2001)

Release Date

2001-08-08

Peptides

HOLLIDAY JUNCTION DNA HELICASE RUVB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HOLLIDAY JUNCTION DNA HELICASE RUVB