SMTL ID : 1jaq.1

COMPLEX OF 1-HYDROXYLAMINE-2-ISOBUTYLMALONYL-ALA-GLY-NH2 WITH THE CATALYTIC DOMAIN OF MATRIX METALLO PROTEINASE-8 (MET80 FORM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.58, N.60, G.90, I.91, G.92, D.94 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.58, A:G.90, A:G.92, A:D.94, H2O.2 CA.3: 7 residues within 4Å: Chain A: D.75, G.76, P.77, N.78, I.80, D.98, E.101 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.75, A:G.76, A:N.78, A:I.80, A:D.98, A:E.101

1 x 01S: N-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-alanylglycinamide(Non-covalent)

01S.2: 16 residues within 4Å: Chain A: I.80, L.81, A.82, H.83, A.84, V.115, H.118, E.119, H.122, H.128, L.135, Y.137, P.138, N.139, Y.140 Ligands: ZN.5 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.80 Hydrogen bonds: A:L.81, A:A.82, A:A.82, A:E.119, A:P.138, A:P.138, A:Y.140 Water bridges: A:H.118

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.68, D.70, H.83, F.85, H.96 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.68, A:D.70, A:H.83, A:H.96 ZN.5: 4 residues within 4Å: Chain A: H.118, H.122, H.128 Ligands: 01S.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.118, A:H.122, A:H.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grams, F. et al., X-ray structures of human neutrophil collagenase complexed with peptide hydroxamate and peptide thiol inhibitors. Implications for substrate binding and rational drug design. Eur.J.Biochem. (1995)

Release Date

1996-07-11

Peptides

MATRIX METALLO PROTEINASE-8 (MET80 FORM): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MATRIX METALLO PROTEINASE-8 (MET80 FORM)

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