SMTL ID : 1jdn.1

Crystal Structure of Hormone Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NDG- BMA- MAN- BMA- BMA: beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-BMA-MAN-BMA-BMA.1: 13 residues within 4Å: Chain A: E.247, N.250, T.280, L.281, L.282, R.283, T.284, V.285, E.290, M.294, E.316, I.376, V.388 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.290, A:E.290, A:N.250, A:L.282, A:T.284, A:T.284, A:R.283, A:T.284 Hydrophobic interactions: A:L.281, A:I.376 NAG-NDG-BMA-MAN-BMA-BMA.5: 13 residues within 4Å: Chain B: E.247, N.250, T.280, L.281, L.282, R.283, T.284, V.285, E.290, M.294, E.316, I.376, V.388 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.290, B:N.250, B:L.282, B:T.284, B:T.284, B:T.284, B:R.283, B:T.284 Hydrophobic interactions: B:L.281, B:I.376

2 x NAG- NAG- MAN- BMA- FUC: beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-BMA-FUC.2: 4 residues within 4Å: Chain A: N.351, T.353, A.365, K.395 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.353, A:T.353, A:K.395 NAG-NAG-MAN-BMA-FUC.6: 4 residues within 4Å: Chain B: N.351, T.353, A.365, K.395 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.353, B:T.353, B:K.395

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain A: P.17, F.24, S.63, C.65, P.91, V.92, C.93 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: H.106 Chain B: R.68, F.71 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain B: P.17, F.24, S.63, C.65, P.91, V.92, C.93 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: R.68, F.71 Chain B: H.106 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, X.l. et al., Allosteric activation of a spring-loaded natriuretic peptide receptor dimer by hormone. Science (2001)

Release Date

2001-09-05

Peptides

ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR

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