SMTL ID : 1jdo.1

SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.52, E.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.53 Water bridges: A:A.54

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 17 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 Ligands: NO.3 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:V.69, A:A.72, A:H.98, A:I.100, A:Y.104, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:R.46, A:H.65, A:S.93 Salt bridges: A:R.46, A:H.94, A:H.98 Metal complexes: A:H.94, NO.3

1 x NO: NITRIC OXIDE(Non-covalent)

NO.3: 5 residues within 4Å: Chain A: F.30, F.44, H.65, V.69 Ligands: HEM.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brucker, E.A. et al., Nitric oxide myoglobin: crystal structure and analysis of ligand geometry. Proteins (1998)

Release Date

1998-05-27

Peptides

MYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOGLOBIN

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