- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 42 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)
- 18 x CA: CALCIUM ION(Non-covalent)
CA.6: 1 residues within 4Å:- Chain A: D.150
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.150, A:D.150
CA.8: 2 residues within 4Å:- Chain A: K.296, D.302
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.302, A:D.302
CA.9: 1 residues within 4Å:- Chain A: D.488
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.488, H2O.1, H2O.1, H2O.10
CA.34: 1 residues within 4Å:- Chain B: D.150
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.150, B:D.150
CA.36: 2 residues within 4Å:- Chain B: K.296, D.302
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.302, B:D.302
CA.37: 1 residues within 4Å:- Chain B: D.488
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.488, H2O.17, H2O.18, H2O.27
CA.62: 1 residues within 4Å:- Chain C: D.150
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.150, C:D.150
CA.64: 2 residues within 4Å:- Chain C: K.296, D.302
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.302, C:D.302
CA.65: 1 residues within 4Å:- Chain C: D.488
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:D.488, H2O.34, H2O.35, H2O.44
CA.90: 1 residues within 4Å:- Chain D: D.150
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.150, D:D.150
CA.92: 2 residues within 4Å:- Chain D: K.296, D.302
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.302, D:D.302
CA.93: 1 residues within 4Å:- Chain D: D.488
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:D.488, H2O.51, H2O.52, H2O.61
CA.118: 1 residues within 4Å:- Chain E: D.150
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:D.150, E:D.150
CA.120: 2 residues within 4Å:- Chain E: K.296, D.302
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:D.302, E:D.302
CA.121: 1 residues within 4Å:- Chain E: D.488
4 PLIP interactions:1 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: E:D.488, H2O.68, H2O.68, H2O.78
CA.146: 1 residues within 4Å:- Chain F: D.150
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.150, F:D.150
CA.148: 2 residues within 4Å:- Chain F: K.296, D.302
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.302, F:D.302
CA.149: 1 residues within 4Å:- Chain F: D.488
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:D.488, H2O.85, H2O.85, H2O.95
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.10: 4 residues within 4Å:- Chain A: E.45, L.162, P.163, H.165
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.45, A:P.163, A:H.165, H2O.17
MG.38: 4 residues within 4Å:- Chain B: E.45, L.162, P.163, H.165
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.45, B:P.163, B:H.165, H2O.34
MG.66: 4 residues within 4Å:- Chain C: E.45, L.162, P.163, H.165
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.45, C:P.163, C:H.165, H2O.51
MG.94: 4 residues within 4Å:- Chain D: E.45, L.162, P.163, H.165
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.45, D:P.163, D:H.165, H2O.67
MG.122: 4 residues within 4Å:- Chain E: E.45, L.162, P.163, H.165
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.45, E:P.163, E:H.165, H2O.84
MG.150: 4 residues within 4Å:- Chain F: E.45, L.162, P.163, H.165
4 PLIP interactions:3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.45, F:P.163, F:H.165, H2O.101
- 18 x NA: SODIUM ION(Non-functional Binders)
NA.11: 1 residues within 4Å:- Chain A: D.308
Ligand excluded by PLIPNA.12: 2 residues within 4Å:- Chain A: F.193, H.203
Ligand excluded by PLIPNA.13: 2 residues within 4Å:- Chain A: P.1, D.321
Ligand excluded by PLIPNA.39: 1 residues within 4Å:- Chain B: D.308
Ligand excluded by PLIPNA.40: 2 residues within 4Å:- Chain B: F.193, H.203
Ligand excluded by PLIPNA.41: 2 residues within 4Å:- Chain B: P.1, D.321
Ligand excluded by PLIPNA.67: 1 residues within 4Å:- Chain C: D.308
Ligand excluded by PLIPNA.68: 2 residues within 4Å:- Chain C: F.193, H.203
Ligand excluded by PLIPNA.69: 2 residues within 4Å:- Chain C: P.1, D.321
Ligand excluded by PLIPNA.95: 1 residues within 4Å:- Chain D: D.308
Ligand excluded by PLIPNA.96: 2 residues within 4Å:- Chain D: F.193, H.203
Ligand excluded by PLIPNA.97: 2 residues within 4Å:- Chain D: P.1, D.321
Ligand excluded by PLIPNA.123: 1 residues within 4Å:- Chain E: D.308
Ligand excluded by PLIPNA.124: 2 residues within 4Å:- Chain E: F.193, H.203
Ligand excluded by PLIPNA.125: 2 residues within 4Å:- Chain E: P.1, D.321
Ligand excluded by PLIPNA.151: 1 residues within 4Å:- Chain F: D.308
Ligand excluded by PLIPNA.152: 2 residues within 4Å:- Chain F: F.193, H.203
Ligand excluded by PLIPNA.153: 2 residues within 4Å:- Chain F: P.1, D.321
Ligand excluded by PLIP- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.15: 8 residues within 4Å:- Chain A: H.165, Y.166, D.167, R.172, H.234
- Chain E: S.416
- Ligands: CD.1, ACY.26
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: A:Y.166, E:S.416, E:S.416
- Salt bridges: A:H.165, A:R.172
SO4.43: 8 residues within 4Å:- Chain B: H.165, Y.166, D.167, R.172, H.234
- Chain D: S.416
- Ligands: CD.29, ACY.54
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:Y.166, D:S.416, D:S.416
- Salt bridges: B:H.165, B:R.172
SO4.71: 8 residues within 4Å:- Chain C: H.165, Y.166, D.167, R.172, H.234
- Chain F: S.416
- Ligands: CD.57, ACY.82
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain F- Hydrogen bonds: C:Y.166, F:S.416, F:S.416
- Salt bridges: C:H.165, C:R.172
SO4.99: 8 residues within 4Å:- Chain B: S.416
- Chain D: H.165, Y.166, D.167, R.172, H.234
- Ligands: CD.85, ACY.110
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Hydrogen bonds: B:S.416, B:S.416, D:Y.166
- Salt bridges: D:H.165, D:R.172
SO4.127: 8 residues within 4Å:- Chain A: S.416
- Chain E: H.165, Y.166, D.167, R.172, H.234
- Ligands: CD.113, ACY.138
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain E- Hydrogen bonds: A:S.416, A:S.416, E:Y.166
- Salt bridges: E:H.165, E:R.172
SO4.155: 8 residues within 4Å:- Chain C: S.416
- Chain F: H.165, Y.166, D.167, R.172, H.234
- Ligands: CD.141, ACY.166
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain C- Hydrogen bonds: F:Y.166, C:S.416, C:S.416
- Salt bridges: F:H.165, F:R.172
- 6 x THJ: THIOSULFATE(Non-covalent)
THJ.16: 8 residues within 4Å:- Chain A: Q.194, T.195, R.196, M.262, M.264, H.291, A.292
- Ligands: CD.14
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Q.194, A:R.196, A:A.292
- Water bridges: A:T.195, A:R.196, A:G.293
- Salt bridges: A:R.196
THJ.44: 8 residues within 4Å:- Chain B: Q.194, T.195, R.196, M.262, M.264, H.291, A.292
- Ligands: CD.42
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Q.194, B:R.196, B:A.292
- Water bridges: B:T.195, B:R.196, B:G.293
- Salt bridges: B:R.196
THJ.72: 8 residues within 4Å:- Chain C: Q.194, T.195, R.196, M.262, M.264, H.291, A.292
- Ligands: CD.70
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:Q.194, C:R.196, C:A.292
- Water bridges: C:T.195, C:R.196, C:G.293
- Salt bridges: C:R.196
THJ.100: 8 residues within 4Å:- Chain D: Q.194, T.195, R.196, M.262, M.264, H.291, A.292
- Ligands: CD.98
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:Q.194, D:R.196, D:A.292
- Water bridges: D:R.196, D:N.197, D:G.293
- Salt bridges: D:R.196
THJ.128: 8 residues within 4Å:- Chain E: Q.194, T.195, R.196, M.262, M.264, H.291, A.292
- Ligands: CD.126
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:Q.194, E:R.196, E:A.292
- Water bridges: E:R.196, E:N.197, E:G.293
- Salt bridges: E:R.196
THJ.156: 8 residues within 4Å:- Chain F: Q.194, T.195, R.196, M.262, M.264, H.291, A.292
- Ligands: CD.154
7 PLIP interactions:7 interactions with chain F- Hydrogen bonds: F:Q.194, F:R.196, F:A.292
- Water bridges: F:R.196, F:N.197, F:G.293
- Salt bridges: F:R.196
- 72 x ACY: ACETIC ACID(Non-functional Binders)
ACY.17: 7 residues within 4Å:- Chain A: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.3
Ligand excluded by PLIPACY.18: 7 residues within 4Å:- Chain A: Q.186, D.188
- Chain C: P.490, S.492, H.493
- Ligands: CD.5, ACY.25
Ligand excluded by PLIPACY.19: 5 residues within 4Å:- Chain A: E.485, E.489, P.490, H.493
- Chain B: N.215
Ligand excluded by PLIPACY.20: 7 residues within 4Å:- Chain A: K.173, Q.177, E.181
- Chain F: L.180, E.181, S.184
- Ligands: ACY.160
Ligand excluded by PLIPACY.21: 3 residues within 4Å:- Chain A: E.129, R.133, G.134
Ligand excluded by PLIPACY.22: 5 residues within 4Å:- Chain A: P.54, L.55, T.56, G.57, D.63
Ligand excluded by PLIPACY.23: 1 residues within 4Å:- Chain A: D.70
Ligand excluded by PLIPACY.24: 9 residues within 4Å:- Chain A: E.181, R.185
- Chain F: G.170, K.173, E.181, F.254
- Ligands: CD.4, CD.144, ACY.164
Ligand excluded by PLIPACY.25: 6 residues within 4Å:- Chain A: D.188, R.189
- Chain C: P.490, H.493
- Ligands: CD.5, ACY.18
Ligand excluded by PLIPACY.26: 6 residues within 4Å:- Chain A: H.234, H.235
- Chain E: L.415, S.416
- Ligands: CD.1, SO4.15
Ligand excluded by PLIPACY.27: 5 residues within 4Å:- Chain A: K.217, N.250, G.251
- Chain C: Q.496, V.499
Ligand excluded by PLIPACY.28: 4 residues within 4Å:- Chain A: G.424, S.448
- Chain E: S.448
- Ligands: ACY.140
Ligand excluded by PLIPACY.45: 7 residues within 4Å:- Chain B: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.31
Ligand excluded by PLIPACY.46: 7 residues within 4Å:- Chain A: P.490, S.492, H.493
- Chain B: Q.186, D.188
- Ligands: CD.33, ACY.53
Ligand excluded by PLIPACY.47: 5 residues within 4Å:- Chain B: E.485, E.489, P.490, H.493
- Chain C: N.215
Ligand excluded by PLIPACY.48: 7 residues within 4Å:- Chain B: K.173, Q.177, E.181
- Chain E: L.180, E.181, S.184
- Ligands: ACY.132
Ligand excluded by PLIPACY.49: 3 residues within 4Å:- Chain B: E.129, R.133, G.134
Ligand excluded by PLIPACY.50: 5 residues within 4Å:- Chain B: P.54, L.55, T.56, G.57, D.63
Ligand excluded by PLIPACY.51: 1 residues within 4Å:- Chain B: D.70
Ligand excluded by PLIPACY.52: 9 residues within 4Å:- Chain B: E.181, R.185
- Chain E: G.170, K.173, E.181, F.254
- Ligands: CD.32, CD.116, ACY.136
Ligand excluded by PLIPACY.53: 6 residues within 4Å:- Chain A: P.490, H.493
- Chain B: D.188, R.189
- Ligands: CD.33, ACY.46
Ligand excluded by PLIPACY.54: 6 residues within 4Å:- Chain B: H.234, H.235
- Chain D: L.415, S.416
- Ligands: CD.29, SO4.43
Ligand excluded by PLIPACY.55: 5 residues within 4Å:- Chain A: Q.496, V.499
- Chain B: K.217, N.250, G.251
Ligand excluded by PLIPACY.56: 4 residues within 4Å:- Chain B: G.424, S.448
- Chain D: S.448
- Ligands: ACY.112
Ligand excluded by PLIPACY.73: 7 residues within 4Å:- Chain C: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.59
Ligand excluded by PLIPACY.74: 7 residues within 4Å:- Chain B: P.490, S.492, H.493
- Chain C: Q.186, D.188
- Ligands: CD.61, ACY.81
Ligand excluded by PLIPACY.75: 5 residues within 4Å:- Chain A: N.215
- Chain C: E.485, E.489, P.490, H.493
Ligand excluded by PLIPACY.76: 7 residues within 4Å:- Chain C: K.173, Q.177, E.181
- Chain D: L.180, E.181, S.184
- Ligands: ACY.104
Ligand excluded by PLIPACY.77: 3 residues within 4Å:- Chain C: E.129, R.133, G.134
Ligand excluded by PLIPACY.78: 5 residues within 4Å:- Chain C: P.54, L.55, T.56, G.57, D.63
Ligand excluded by PLIPACY.79: 1 residues within 4Å:- Chain C: D.70
Ligand excluded by PLIPACY.80: 9 residues within 4Å:- Chain C: E.181, R.185
- Chain D: G.170, K.173, E.181, F.254
- Ligands: CD.60, CD.88, ACY.108
Ligand excluded by PLIPACY.81: 6 residues within 4Å:- Chain B: P.490, H.493
- Chain C: D.188, R.189
- Ligands: CD.61, ACY.74
Ligand excluded by PLIPACY.82: 6 residues within 4Å:- Chain C: H.234, H.235
- Chain F: L.415, S.416
- Ligands: CD.57, SO4.71
Ligand excluded by PLIPACY.83: 5 residues within 4Å:- Chain B: Q.496, V.499
- Chain C: K.217, N.250, G.251
Ligand excluded by PLIPACY.84: 4 residues within 4Å:- Chain C: G.424, S.448
- Chain F: S.448
- Ligands: ACY.168
Ligand excluded by PLIPACY.101: 7 residues within 4Å:- Chain D: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.87
Ligand excluded by PLIPACY.102: 7 residues within 4Å:- Chain D: Q.186, D.188
- Chain F: P.490, S.492, H.493
- Ligands: CD.89, ACY.109
Ligand excluded by PLIPACY.103: 5 residues within 4Å:- Chain D: E.485, E.489, P.490, H.493
- Chain E: N.215
Ligand excluded by PLIPACY.104: 7 residues within 4Å:- Chain C: L.180, E.181, S.184
- Chain D: K.173, Q.177, E.181
- Ligands: ACY.76
Ligand excluded by PLIPACY.105: 3 residues within 4Å:- Chain D: E.129, R.133, G.134
Ligand excluded by PLIPACY.106: 5 residues within 4Å:- Chain D: P.54, L.55, T.56, G.57, D.63
Ligand excluded by PLIPACY.107: 1 residues within 4Å:- Chain D: D.70
Ligand excluded by PLIPACY.108: 9 residues within 4Å:- Chain C: G.170, K.173, E.181, F.254
- Chain D: E.181, R.185
- Ligands: CD.60, ACY.80, CD.88
Ligand excluded by PLIPACY.109: 6 residues within 4Å:- Chain D: D.188, R.189
- Chain F: P.490, H.493
- Ligands: CD.89, ACY.102
Ligand excluded by PLIPACY.110: 6 residues within 4Å:- Chain B: L.415, S.416
- Chain D: H.234, H.235
- Ligands: CD.85, SO4.99
Ligand excluded by PLIPACY.111: 5 residues within 4Å:- Chain D: K.217, N.250, G.251
- Chain F: Q.496, V.499
Ligand excluded by PLIPACY.112: 4 residues within 4Å:- Chain B: S.448
- Chain D: G.424, S.448
- Ligands: ACY.56
Ligand excluded by PLIPACY.129: 7 residues within 4Å:- Chain E: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.115
Ligand excluded by PLIPACY.130: 7 residues within 4Å:- Chain D: P.490, S.492, H.493
- Chain E: Q.186, D.188
- Ligands: CD.117, ACY.137
Ligand excluded by PLIPACY.131: 5 residues within 4Å:- Chain E: E.485, E.489, P.490, H.493
- Chain F: N.215
Ligand excluded by PLIPACY.132: 7 residues within 4Å:- Chain B: L.180, E.181, S.184
- Chain E: K.173, Q.177, E.181
- Ligands: ACY.48
Ligand excluded by PLIPACY.133: 3 residues within 4Å:- Chain E: E.129, R.133, G.134
Ligand excluded by PLIPACY.134: 5 residues within 4Å:- Chain E: P.54, L.55, T.56, G.57, D.63
Ligand excluded by PLIPACY.135: 1 residues within 4Å:- Chain E: D.70
Ligand excluded by PLIPACY.136: 9 residues within 4Å:- Chain B: G.170, K.173, E.181, F.254
- Chain E: E.181, R.185
- Ligands: CD.32, ACY.52, CD.116
Ligand excluded by PLIPACY.137: 6 residues within 4Å:- Chain D: P.490, H.493
- Chain E: D.188, R.189
- Ligands: CD.117, ACY.130
Ligand excluded by PLIPACY.138: 6 residues within 4Å:- Chain A: L.415, S.416
- Chain E: H.234, H.235
- Ligands: CD.113, SO4.127
Ligand excluded by PLIPACY.139: 5 residues within 4Å:- Chain D: Q.496, V.499
- Chain E: K.217, N.250, G.251
Ligand excluded by PLIPACY.140: 4 residues within 4Å:- Chain A: S.448
- Chain E: G.424, S.448
- Ligands: ACY.28
Ligand excluded by PLIPACY.157: 7 residues within 4Å:- Chain F: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.143
Ligand excluded by PLIPACY.158: 7 residues within 4Å:- Chain E: P.490, S.492, H.493
- Chain F: Q.186, D.188
- Ligands: CD.145, ACY.165
Ligand excluded by PLIPACY.159: 5 residues within 4Å:- Chain D: N.215
- Chain F: E.485, E.489, P.490, H.493
Ligand excluded by PLIPACY.160: 7 residues within 4Å:- Chain A: L.180, E.181, S.184
- Chain F: K.173, Q.177, E.181
- Ligands: ACY.20
Ligand excluded by PLIPACY.161: 3 residues within 4Å:- Chain F: E.129, R.133, G.134
Ligand excluded by PLIPACY.162: 5 residues within 4Å:- Chain F: P.54, L.55, T.56, G.57, D.63
Ligand excluded by PLIPACY.163: 1 residues within 4Å:- Chain F: D.70
Ligand excluded by PLIPACY.164: 9 residues within 4Å:- Chain A: G.170, K.173, E.181, F.254
- Chain F: E.181, R.185
- Ligands: CD.4, ACY.24, CD.144
Ligand excluded by PLIPACY.165: 6 residues within 4Å:- Chain E: P.490, H.493
- Chain F: D.188, R.189
- Ligands: CD.145, ACY.158
Ligand excluded by PLIPACY.166: 6 residues within 4Å:- Chain C: L.415, S.416
- Chain F: H.234, H.235
- Ligands: CD.141, SO4.155
Ligand excluded by PLIPACY.167: 5 residues within 4Å:- Chain E: Q.496, V.499
- Chain F: K.217, N.250, G.251
Ligand excluded by PLIPACY.168: 4 residues within 4Å:- Chain C: S.448
- Chain F: G.424, S.448
- Ligands: ACY.84
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ullrich, T.C. et al., The complex structures of ATP sulfurylase with thiosulfate, ADP and chlorate reveal new insights in inhibitory effects and the catalytic cycle. J.Mol.Biol. (2001)
- Release Date
- 2001-11-14
- Peptides
- SULFATE ADENYLYLTRANSFERASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 42 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)
- 18 x CA: CALCIUM ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 18 x NA: SODIUM ION(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x THJ: THIOSULFATE(Non-covalent)
- 72 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ullrich, T.C. et al., The complex structures of ATP sulfurylase with thiosulfate, ADP and chlorate reveal new insights in inhibitory effects and the catalytic cycle. J.Mol.Biol. (2001)
- Release Date
- 2001-11-14
- Peptides
- SULFATE ADENYLYLTRANSFERASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A