- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 33 x CD: CADMIUM ION(Non-covalent)
- 18 x CA: CALCIUM ION(Non-covalent)
CA.6: 1 residues within 4Å:- Chain A: D.150
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.150, A:D.150
CA.8: 2 residues within 4Å:- Chain A: K.296, D.302
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.302
CA.9: 1 residues within 4Å:- Chain A: D.488
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.488, A:D.488, H2O.54
CA.23: 1 residues within 4Å:- Chain B: D.150
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.150, B:D.150, H2O.400, H2O.464
CA.25: 2 residues within 4Å:- Chain B: K.296, D.302
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.302
CA.26: 1 residues within 4Å:- Chain B: D.488
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.488, B:D.488
CA.58: 1 residues within 4Å:- Chain C: D.150
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.150, C:D.150
CA.60: 2 residues within 4Å:- Chain C: K.296, D.302
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.302
CA.61: 1 residues within 4Å:- Chain C: D.488
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.488, C:D.488, H2O.618
CA.75: 1 residues within 4Å:- Chain D: D.150
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.150, D:D.150, H2O.964, H2O.1028
CA.77: 2 residues within 4Å:- Chain D: K.296, D.302
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:D.302
CA.78: 1 residues within 4Å:- Chain D: D.488
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.488, D:D.488
CA.110: 1 residues within 4Å:- Chain E: D.150
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:D.150, E:D.150
CA.112: 2 residues within 4Å:- Chain E: K.296, D.302
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.302
CA.113: 1 residues within 4Å:- Chain E: D.488
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.488, E:D.488, H2O.1182
CA.127: 1 residues within 4Å:- Chain F: D.150
4 PLIP interactions:2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:D.150, F:D.150, H2O.1528, H2O.1592
CA.129: 2 residues within 4Å:- Chain F: K.296, D.302
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:D.302
CA.130: 1 residues within 4Å:- Chain F: D.488
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.488, F:D.488
- 36 x NA: SODIUM ION(Non-functional Binders)
NA.7: 1 residues within 4Å:- Chain F: E.408
Ligand excluded by PLIPNA.11: 1 residues within 4Å:- Chain A: D.308
Ligand excluded by PLIPNA.12: 1 residues within 4Å:- Chain A: D.321
Ligand excluded by PLIPNA.14: 1 residues within 4Å:- Chain A: E.129
Ligand excluded by PLIPNA.15: 1 residues within 4Å:- Chain A: E.323
Ligand excluded by PLIPNA.16: 1 residues within 4Å:- Chain A: D.504
Ligand excluded by PLIPNA.24: 1 residues within 4Å:- Chain C: E.408
Ligand excluded by PLIPNA.28: 1 residues within 4Å:- Chain B: D.308
Ligand excluded by PLIPNA.29: 1 residues within 4Å:- Chain B: E.323
Ligand excluded by PLIPNA.30: 1 residues within 4Å:- Chain B: D.321
Ligand excluded by PLIPNA.31: 3 residues within 4Å:- Chain B: P.1, A.2, D.321
Ligand excluded by PLIPNA.32: 1 residues within 4Å:- Chain B: D.504
Ligand excluded by PLIPNA.59: 1 residues within 4Å:- Chain B: E.408
Ligand excluded by PLIPNA.63: 1 residues within 4Å:- Chain C: D.308
Ligand excluded by PLIPNA.64: 1 residues within 4Å:- Chain C: D.321
Ligand excluded by PLIPNA.66: 1 residues within 4Å:- Chain C: E.129
Ligand excluded by PLIPNA.67: 1 residues within 4Å:- Chain C: E.323
Ligand excluded by PLIPNA.68: 1 residues within 4Å:- Chain C: D.504
Ligand excluded by PLIPNA.76: 1 residues within 4Å:- Chain E: E.408
Ligand excluded by PLIPNA.80: 1 residues within 4Å:- Chain D: D.308
Ligand excluded by PLIPNA.81: 1 residues within 4Å:- Chain D: E.323
Ligand excluded by PLIPNA.82: 1 residues within 4Å:- Chain D: D.321
Ligand excluded by PLIPNA.83: 3 residues within 4Å:- Chain D: P.1, A.2, D.321
Ligand excluded by PLIPNA.84: 1 residues within 4Å:- Chain D: D.504
Ligand excluded by PLIPNA.111: 1 residues within 4Å:- Chain D: E.408
Ligand excluded by PLIPNA.115: 1 residues within 4Å:- Chain E: D.308
Ligand excluded by PLIPNA.116: 1 residues within 4Å:- Chain E: D.321
Ligand excluded by PLIPNA.118: 1 residues within 4Å:- Chain E: E.129
Ligand excluded by PLIPNA.119: 1 residues within 4Å:- Chain E: E.323
Ligand excluded by PLIPNA.120: 1 residues within 4Å:- Chain E: D.504
Ligand excluded by PLIPNA.128: 1 residues within 4Å:- Chain A: E.408
Ligand excluded by PLIPNA.132: 1 residues within 4Å:- Chain F: D.308
Ligand excluded by PLIPNA.133: 1 residues within 4Å:- Chain F: E.323
Ligand excluded by PLIPNA.134: 1 residues within 4Å:- Chain F: D.321
Ligand excluded by PLIPNA.135: 3 residues within 4Å:- Chain F: P.1, A.2, D.321
Ligand excluded by PLIPNA.136: 1 residues within 4Å:- Chain F: D.504
Ligand excluded by PLIP- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.10: 3 residues within 4Å:- Chain A: E.45, P.163, H.165
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.45, A:P.163, A:H.165, H2O.231
MG.17: 2 residues within 4Å:- Chain A: R.196
- Ligands: ADP.34
No protein-ligand interaction detected (PLIP)MG.27: 4 residues within 4Å:- Chain B: E.45, P.163, Q.164, H.165
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.45, B:P.163, B:H.165, B:H.165
MG.33: 2 residues within 4Å:- Chain B: R.196
- Ligands: ADP.35
No protein-ligand interaction detected (PLIP)MG.62: 3 residues within 4Å:- Chain C: E.45, P.163, H.165
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.45, C:P.163, C:H.165, H2O.795
MG.69: 2 residues within 4Å:- Chain C: R.196
- Ligands: ADP.86
No protein-ligand interaction detected (PLIP)MG.79: 4 residues within 4Å:- Chain D: E.45, P.163, Q.164, H.165
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.45, D:P.163, D:H.165, D:H.165
MG.85: 2 residues within 4Å:- Chain D: R.196
- Ligands: ADP.87
No protein-ligand interaction detected (PLIP)MG.114: 3 residues within 4Å:- Chain E: E.45, P.163, H.165
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.45, E:P.163, E:H.165, H2O.1359
MG.121: 2 residues within 4Å:- Chain E: R.196
- Ligands: ADP.138
No protein-ligand interaction detected (PLIP)MG.131: 4 residues within 4Å:- Chain F: E.45, P.163, Q.164, H.165
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:E.45, F:P.163, F:H.165, F:H.165
MG.137: 2 residues within 4Å:- Chain F: R.196
- Ligands: ADP.139
No protein-ligand interaction detected (PLIP)- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.34: 16 residues within 4Å:- Chain A: F.193, Q.194, T.195, R.196, N.197, H.203, L.206, M.262, G.288, R.289, H.291, A.292, R.328, M.329, V.330
- Ligands: MG.17
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:Q.194, A:T.195, A:R.196, A:N.197, A:N.197, A:G.288, A:R.289, A:H.291, A:A.292, A:V.330, A:V.330
- Salt bridges: A:R.196, A:R.196, A:H.291
ADP.35: 15 residues within 4Å:- Chain B: F.193, Q.194, T.195, R.196, N.197, H.203, L.206, G.288, R.289, H.291, A.292, R.328, M.329, V.330
- Ligands: MG.33
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:Q.194, B:R.196, B:N.197, B:N.197, B:G.288, B:R.289, B:H.291, B:A.292, B:V.330, B:V.330
- Salt bridges: B:R.196, B:R.196, B:H.291
ADP.86: 16 residues within 4Å:- Chain C: F.193, Q.194, T.195, R.196, N.197, H.203, L.206, M.262, G.288, R.289, H.291, A.292, R.328, M.329, V.330
- Ligands: MG.69
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:Q.194, C:T.195, C:R.196, C:N.197, C:N.197, C:G.288, C:R.289, C:H.291, C:A.292, C:V.330, C:V.330
- Salt bridges: C:R.196, C:R.196, C:H.291
ADP.87: 15 residues within 4Å:- Chain D: F.193, Q.194, T.195, R.196, N.197, H.203, L.206, G.288, R.289, H.291, A.292, R.328, M.329, V.330
- Ligands: MG.85
13 PLIP interactions:13 interactions with chain D- Hydrogen bonds: D:Q.194, D:R.196, D:N.197, D:N.197, D:G.288, D:R.289, D:H.291, D:A.292, D:V.330, D:V.330
- Salt bridges: D:R.196, D:R.196, D:H.291
ADP.138: 16 residues within 4Å:- Chain E: F.193, Q.194, T.195, R.196, N.197, H.203, L.206, M.262, G.288, R.289, H.291, A.292, R.328, M.329, V.330
- Ligands: MG.121
14 PLIP interactions:14 interactions with chain E- Hydrogen bonds: E:Q.194, E:T.195, E:R.196, E:N.197, E:N.197, E:G.288, E:R.289, E:H.291, E:A.292, E:V.330, E:V.330
- Salt bridges: E:R.196, E:R.196, E:H.291
ADP.139: 15 residues within 4Å:- Chain F: F.193, Q.194, T.195, R.196, N.197, H.203, L.206, G.288, R.289, H.291, A.292, R.328, M.329, V.330
- Ligands: MG.137
13 PLIP interactions:13 interactions with chain F- Hydrogen bonds: F:Q.194, F:R.196, F:N.197, F:N.197, F:G.288, F:R.289, F:H.291, F:A.292, F:V.330, F:V.330
- Salt bridges: F:R.196, F:R.196, F:H.291
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.36: 9 residues within 4Å:- Chain A: V.224, G.225, L.226, T.227, D.231, I.232, D.233, H.234, R.237
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.227, A:I.232, A:H.234, A:R.237
TRS.37: 9 residues within 4Å:- Chain B: V.224, G.225, L.226, T.227, D.231, I.232, D.233, H.234, R.237
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:V.224, B:T.227, B:T.227, B:I.232, B:H.234, B:R.237
TRS.88: 9 residues within 4Å:- Chain C: V.224, G.225, L.226, T.227, D.231, I.232, D.233, H.234, R.237
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.227, C:I.232, C:H.234, C:R.237
TRS.89: 9 residues within 4Å:- Chain D: V.224, G.225, L.226, T.227, D.231, I.232, D.233, H.234, R.237
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:V.224, D:T.227, D:T.227, D:I.232, D:H.234, D:R.237
TRS.140: 9 residues within 4Å:- Chain E: V.224, G.225, L.226, T.227, D.231, I.232, D.233, H.234, R.237
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:T.227, E:I.232, E:H.234, E:R.237
TRS.141: 9 residues within 4Å:- Chain F: V.224, G.225, L.226, T.227, D.231, I.232, D.233, H.234, R.237
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:V.224, F:T.227, F:T.227, F:I.232, F:H.234, F:R.237
- 45 x ACY: ACETIC ACID(Non-functional Binders)
ACY.38: 7 residues within 4Å:- Chain A: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.3
Ligand excluded by PLIPACY.39: 7 residues within 4Å:- Chain A: Q.186, D.188
- Chain E: P.490, S.492, H.493
- Ligands: CD.5, ACY.43
Ligand excluded by PLIPACY.40: 5 residues within 4Å:- Chain A: E.485, E.489, H.493, K.497
- Chain C: N.215
Ligand excluded by PLIPACY.41: 9 residues within 4Å:- Chain A: K.173, Q.177, L.180, E.181
- Chain D: L.180, E.181, S.184
- Ligands: CD.73, ACY.100
Ligand excluded by PLIPACY.42: 9 residues within 4Å:- Chain A: E.181, R.185
- Chain D: L.171, K.173, E.181, F.254
- Ligands: CD.4, CD.73, ACY.101
Ligand excluded by PLIPACY.43: 6 residues within 4Å:- Chain A: D.188, R.189
- Chain E: P.490, H.493
- Ligands: CD.5, ACY.39
Ligand excluded by PLIPACY.44: 6 residues within 4Å:- Chain A: D.167, H.234, H.235
- Chain F: S.416, L.419
- Ligands: CD.1
Ligand excluded by PLIPACY.45: 7 residues within 4Å:- Chain B: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.20
Ligand excluded by PLIPACY.46: 7 residues within 4Å:- Chain B: Q.186, D.188
- Chain D: P.490, S.492, H.493
- Ligands: CD.22, ACY.50
Ligand excluded by PLIPACY.47: 5 residues within 4Å:- Chain B: E.485, E.489, H.493, K.497
- Chain F: N.215
Ligand excluded by PLIPACY.48: 7 residues within 4Å:- Chain B: K.173, Q.177, E.181
- Chain E: E.181, S.184
- Ligands: CD.21, ACY.145
Ligand excluded by PLIPACY.49: 10 residues within 4Å:- Chain B: E.181, R.185
- Chain E: G.170, L.171, K.173, E.181, F.254
- Ligands: CD.21, CD.108, ACY.146
Ligand excluded by PLIPACY.50: 6 residues within 4Å:- Chain B: D.188, R.189
- Chain D: P.490, H.493
- Ligands: CD.22, ACY.46
Ligand excluded by PLIPACY.51: 7 residues within 4Å:- Chain B: D.167, H.234, H.235
- Chain C: L.415, S.416, L.419
- Ligands: CD.18
Ligand excluded by PLIPACY.52: 3 residues within 4Å:- Chain A: D.70, R.72
- Ligands: CD.13
Ligand excluded by PLIPACY.90: 7 residues within 4Å:- Chain C: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.55
Ligand excluded by PLIPACY.91: 7 residues within 4Å:- Chain A: P.490, S.492, H.493
- Chain C: Q.186, D.188
- Ligands: CD.57, ACY.95
Ligand excluded by PLIPACY.92: 5 residues within 4Å:- Chain C: E.485, E.489, H.493, K.497
- Chain E: N.215
Ligand excluded by PLIPACY.93: 9 residues within 4Å:- Chain C: K.173, Q.177, L.180, E.181
- Chain F: L.180, E.181, S.184
- Ligands: CD.125, ACY.152
Ligand excluded by PLIPACY.94: 9 residues within 4Å:- Chain C: E.181, R.185
- Chain F: L.171, K.173, E.181, F.254
- Ligands: CD.56, CD.125, ACY.153
Ligand excluded by PLIPACY.95: 6 residues within 4Å:- Chain A: P.490, H.493
- Chain C: D.188, R.189
- Ligands: CD.57, ACY.91
Ligand excluded by PLIPACY.96: 6 residues within 4Å:- Chain B: S.416, L.419
- Chain C: D.167, H.234, H.235
- Ligands: CD.53
Ligand excluded by PLIPACY.97: 7 residues within 4Å:- Chain D: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.72
Ligand excluded by PLIPACY.98: 7 residues within 4Å:- Chain D: Q.186, D.188
- Chain F: P.490, S.492, H.493
- Ligands: CD.74, ACY.102
Ligand excluded by PLIPACY.99: 5 residues within 4Å:- Chain B: N.215
- Chain D: E.485, E.489, H.493, K.497
Ligand excluded by PLIPACY.100: 7 residues within 4Å:- Chain A: E.181, S.184
- Chain D: K.173, Q.177, E.181
- Ligands: ACY.41, CD.73
Ligand excluded by PLIPACY.101: 10 residues within 4Å:- Chain A: G.170, L.171, K.173, E.181, F.254
- Chain D: E.181, R.185
- Ligands: CD.4, ACY.42, CD.73
Ligand excluded by PLIPACY.102: 6 residues within 4Å:- Chain D: D.188, R.189
- Chain F: P.490, H.493
- Ligands: CD.74, ACY.98
Ligand excluded by PLIPACY.103: 7 residues within 4Å:- Chain D: D.167, H.234, H.235
- Chain E: L.415, S.416, L.419
- Ligands: CD.70
Ligand excluded by PLIPACY.104: 3 residues within 4Å:- Chain C: D.70, R.72
- Ligands: CD.65
Ligand excluded by PLIPACY.142: 7 residues within 4Å:- Chain E: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.107
Ligand excluded by PLIPACY.143: 7 residues within 4Å:- Chain C: P.490, S.492, H.493
- Chain E: Q.186, D.188
- Ligands: CD.109, ACY.147
Ligand excluded by PLIPACY.144: 5 residues within 4Å:- Chain A: N.215
- Chain E: E.485, E.489, H.493, K.497
Ligand excluded by PLIPACY.145: 9 residues within 4Å:- Chain B: L.180, E.181, S.184
- Chain E: K.173, Q.177, L.180, E.181
- Ligands: CD.21, ACY.48
Ligand excluded by PLIPACY.146: 9 residues within 4Å:- Chain B: L.171, K.173, E.181, F.254
- Chain E: E.181, R.185
- Ligands: CD.21, ACY.49, CD.108
Ligand excluded by PLIPACY.147: 6 residues within 4Å:- Chain C: P.490, H.493
- Chain E: D.188, R.189
- Ligands: CD.109, ACY.143
Ligand excluded by PLIPACY.148: 6 residues within 4Å:- Chain D: S.416, L.419
- Chain E: D.167, H.234, H.235
- Ligands: CD.105
Ligand excluded by PLIPACY.149: 7 residues within 4Å:- Chain F: A.16, L.17, K.18, K.19, N.20, E.21
- Ligands: CD.124
Ligand excluded by PLIPACY.150: 7 residues within 4Å:- Chain B: P.490, S.492, H.493
- Chain F: Q.186, D.188
- Ligands: CD.126, ACY.154
Ligand excluded by PLIPACY.151: 5 residues within 4Å:- Chain D: N.215
- Chain F: E.485, E.489, H.493, K.497
Ligand excluded by PLIPACY.152: 7 residues within 4Å:- Chain C: E.181, S.184
- Chain F: K.173, Q.177, E.181
- Ligands: ACY.93, CD.125
Ligand excluded by PLIPACY.153: 10 residues within 4Å:- Chain C: G.170, L.171, K.173, E.181, F.254
- Chain F: E.181, R.185
- Ligands: CD.56, ACY.94, CD.125
Ligand excluded by PLIPACY.154: 6 residues within 4Å:- Chain B: P.490, H.493
- Chain F: D.188, R.189
- Ligands: CD.126, ACY.150
Ligand excluded by PLIPACY.155: 7 residues within 4Å:- Chain A: L.415, S.416, L.419
- Chain F: D.167, H.234, H.235
- Ligands: CD.122
Ligand excluded by PLIPACY.156: 3 residues within 4Å:- Chain E: D.70, R.72
- Ligands: CD.117
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ullrich, T.C. et al., The complex structures of ATP sulfurylase with thiosulfate, ADP and chlorate reveal new insights in inhibitory effects and the catalytic cycle. J.Mol.Biol. (2001)
- Release Date
- 2001-11-14
- Peptides
- SULFATE ADENYLYLTRANSFERASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-hexamer
- Ligands
- 33 x CD: CADMIUM ION(Non-covalent)
- 18 x CA: CALCIUM ION(Non-covalent)
- 36 x NA: SODIUM ION(Non-functional Binders)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 45 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ullrich, T.C. et al., The complex structures of ATP sulfurylase with thiosulfate, ADP and chlorate reveal new insights in inhibitory effects and the catalytic cycle. J.Mol.Biol. (2001)
- Release Date
- 2001-11-14
- Peptides
- SULFATE ADENYLYLTRANSFERASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B