SMTL ID : 1jgu.1

STRUCTURAL BASIS FOR DISFAVORED ELIMINATION REACTION IN CATALYTIC ANTIBODY 1D4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x OH: HYDROXIDE ION(Non-covalent)

OH.1: 3 residues within 4Å: Chain B: R.56, H.58 Ligands: HBC.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.56, B:R.56

1 x HBC: (2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)-PHENYL-METHANONE(Non-covalent)

HBC.2: 14 residues within 4Å: Chain A: S.96, V.99, P.100, L.102 Chain B: A.33, W.47, S.50, Y.52, H.58, D.99, A.100, R.103, F.105 Ligands: OH.1 14 PLIP interactions: 10 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:A.33, B:W.47, B:Y.52, B:H.58, B:A.100, B:R.103, B:R.103, B:F.105, A:V.99, A:V.99, A:P.100, A:L.102 Water bridges: B:Y.52 pi-Stacking: B:H.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larsen, N.A. et al., Structural basis for a disfavored elimination reaction in catalytic antibody 1D4. J.Mol.Biol. (2001)

Release Date

2001-12-05

Peptides

Antibody Light Chain: A
Antibody Heavy Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Antibody Light Chain

Antibody Heavy Chain

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