SMTL ID : 1jh1.1

Crystal Structure of MMP-8 complexed with a 6H-1,3,4-thiadiazine derived inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.53, G.85, I.86, G.87, D.89 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.53, A:G.85, A:G.87, H2O.1 CA.2: 6 residues within 4Å: Chain A: D.70, G.71, N.73, I.75, D.93, E.96 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.70, A:G.71, A:I.75, A:D.93, A:E.96

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.63, D.65, H.78, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:D.65, A:H.78, A:H.91 ZN.4: 4 residues within 4Å: Chain A: H.113, H.117, H.123 Ligands: JST.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.113, A:H.117, A:H.123

1 x JST: BUT-3-ENYL-[5-(4-CHLORO-PHENYL)-3,6-DIHYDRO-[1,3,4]THIADIAZIN-2-YLIDENE]-AMINE(Non-covalent)

JST.5: 8 residues within 4Å: Chain A: A.77, H.78, A.79, F.80, H.113, E.114, H.117 Ligands: ZN.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.78 Hydrogen bonds: A:A.79, A:E.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, J. et al., Structure-based design and synthesis of potent matrix metalloproteinase inhibitors derived from a 6H-1,3,4-thiadiazine scaffold. J.Med.Chem. (2001)

Release Date

2001-12-27

Peptides

Matrix Metalloproteinase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Matrix Metalloproteinase 8

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