SMTL ID : 1jhd.1

Crystal Structure of Bacterial ATP Sulfurylase from the Riftia pachyptila Symbiont

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.7, D.8, E.9, K.11 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.8, A:D.8, A:E.9 Salt bridges: A:K.11 SO4.4: 5 residues within 4Å: Chain A: N.202, H.205, H.208, G.361, R.365 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.202 Water bridges: A:H.205, A:H.208, A:H.208, A:G.361, A:G.361, A:G.361, A:G.361, A:T.362 Salt bridges: A:H.208, A:R.365 SO4.8: 4 residues within 4Å: Chain A: A.207, H.208, H.332, T.333 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.333 Water bridges: A:H.332, A:T.333, A:T.333, A:G.361 Salt bridges: A:H.208 SO4.12: 4 residues within 4Å: Chain B: S.7, D.8, E.9, K.11 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.8, B:D.8, B:E.9 Salt bridges: B:K.11 SO4.15: 5 residues within 4Å: Chain B: N.202, H.205, H.208, G.361, R.365 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.202 Water bridges: B:H.205, B:H.208, B:H.208, B:G.361, B:G.361, B:G.361, B:G.361, B:T.362 Salt bridges: B:H.208, B:R.365 SO4.19: 4 residues within 4Å: Chain B: A.207, H.208, H.332, T.333 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.333 Water bridges: B:H.332, B:T.333, B:T.333, B:G.361 Salt bridges: B:H.208

16 x BR: BROMIDE ION(Non-covalent)

BR.2: 2 residues within 4Å: Chain A: S.193, K.194 Ligand excluded by PLIP BR.3: 2 residues within 4Å: Chain A: E.9, L.10 Ligand excluded by PLIP BR.5: 4 residues within 4Å: Chain A: L.233, P.239, A.240 Chain B: P.18 Ligand excluded by PLIP BR.6: 4 residues within 4Å: Chain A: S.37, S.38, Q.39, T.148 Ligand excluded by PLIP BR.7: 3 residues within 4Å: Chain A: Q.199, T.200, R.201 Ligand excluded by PLIP BR.9: 5 residues within 4Å: Chain A: H.205, L.368, S.379, V.383, A.384 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain A: F.173, P.174, D.175, T.176 Ligand excluded by PLIP BR.11: 4 residues within 4Å: Chain A: G.295, R.296, D.331, H.332 Ligand excluded by PLIP BR.13: 2 residues within 4Å: Chain B: S.193, K.194 Ligand excluded by PLIP BR.14: 2 residues within 4Å: Chain B: E.9, L.10 Ligand excluded by PLIP BR.16: 4 residues within 4Å: Chain A: P.18 Chain B: L.233, P.239, A.240 Ligand excluded by PLIP BR.17: 4 residues within 4Å: Chain B: S.37, S.38, Q.39, T.148 Ligand excluded by PLIP BR.18: 3 residues within 4Å: Chain B: Q.199, T.200, R.201 Ligand excluded by PLIP BR.20: 5 residues within 4Å: Chain B: H.205, L.368, S.379, V.383, A.384 Ligand excluded by PLIP BR.21: 4 residues within 4Å: Chain B: F.173, P.174, D.175, T.176 Ligand excluded by PLIP BR.22: 4 residues within 4Å: Chain B: G.295, R.296, D.331, H.332 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beynon, J.D. et al., Crystal structure of ATP sulfurylase from the bacterial symbiont of the hydrothermal vent tubeworm Riftia pachyptila. Biochemistry (2001)

Release Date

2001-12-07

Peptides

SULFATE ADENYLYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SULFATE ADENYLYLTRANSFERASE