SMTL ID : 1jig.1

Dlp-2 from Bacillus anthracis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

homo-12-mer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: D.55, E.59 Chain B: H.28, H.40 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.28, A:D.55, A:D.55, A:E.59, H2O.4 FE.2: 4 residues within 4Å: Chain A: H.28, H.40 Chain B: D.55, E.59 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.55, B:D.55, B:E.59, A:H.28, H2O.7 FE.3: 4 residues within 4Å: Chain C: D.55, E.59 Chain D: H.28, H.40 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: C:D.55, C:E.59, D:H.28, H2O.10, H2O.10 FE.4: 4 residues within 4Å: Chain C: H.28, H.40 Chain D: D.55, E.59 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: C:H.28, D:D.55, D:D.55, D:E.59, H2O.13 FE.5: 4 residues within 4Å: Chain E: D.55, E.59 Chain F: H.28, H.40 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: E:D.55, E:D.55, E:E.59, F:H.28, H2O.16 FE.6: 4 residues within 4Å: Chain E: H.28, H.40 Chain F: D.55, E.59 5 PLIP interactions: 3 interactions with chain F, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: F:D.55, F:D.55, F:E.59, E:H.28, H2O.19 FE.7: 4 residues within 4Å: Chain G: D.55, E.59 Chain H: H.28, H.40 5 PLIP interactions: 2 interactions with chain G, 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: G:D.55, G:E.59, H:H.28, H2O.22, H2O.22 FE.8: 4 residues within 4Å: Chain G: H.28, H.40 Chain H: D.55, E.59 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: H:D.55, H:D.55, H:E.59, G:H.28, H2O.25 FE.9: 4 residues within 4Å: Chain I: D.55, E.59 Chain J: H.28, H.40 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: I:D.55, I:D.55, I:E.59, J:H.28, H2O.28 FE.10: 4 residues within 4Å: Chain I: H.28, H.40 Chain J: D.55, E.59 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: J:D.55, J:D.55, J:E.59, I:H.28, H2O.31 FE.11: 4 residues within 4Å: Chain K: D.55, E.59 Chain L: H.28, H.40 5 PLIP interactions: 2 interactions with chain K, 1 interactions with chain L, 2 Ligand-Water interactions Metal complexes: K:D.55, K:E.59, L:H.28, H2O.34, H2O.34 FE.12: 4 residues within 4Å: Chain K: H.28, H.40 Chain L: D.55, E.59 5 PLIP interactions: 1 interactions with chain K, 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: K:H.28, L:D.55, L:D.55, L:E.59, H2O.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Papinutto, E. et al., Structure of two iron-binding proteins from Bacillus anthracis. J.Biol.Chem. (2002)

Release Date

2002-06-19

Peptides

Dlp-2: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

Dlp-2