SMTL ID : 1jjc.1

Crystal structure at 2.6A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FA5: ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE](Non-covalent)

FA5.1: 22 residues within 4Å: Chain A: W.149, H.178, S.180, Q.183, R.204, E.206, H.212, E.213, F.216, Q.218, E.220, F.258, F.260, L.280, G.281, G.282, A.283, A.314, F.315, G.316, G.318, I.332 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:H.178, A:S.180, A:E.206, A:E.213, A:Q.218 Water bridges: A:T.179, A:S.180, A:R.204 Salt bridges: A:R.204, A:R.204 pi-Stacking: A:F.216, A:F.216, A:F.258, A:F.260 FA5.4: 22 residues within 4Å: Chain C: W.149, H.178, S.180, Q.183, R.204, E.206, H.212, E.213, F.216, Q.218, E.220, F.258, F.260, L.280, G.281, G.282, A.283, A.314, F.315, G.316, G.318, I.332 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:H.178, C:S.180, C:S.180, C:E.206, C:E.213, C:Q.218 Water bridges: C:T.179, C:S.180, C:R.204 Salt bridges: C:R.204, C:R.204 pi-Stacking: C:F.216, C:F.216, C:F.258, C:F.260

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: E.262 Chain B: N.163, D.452, E.461 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.461, H2O.3 MN.5: 4 residues within 4Å: Chain C: E.262 Chain D: N.163, D.452, E.461 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.461, H2O.14

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain B: R.407, Y.410, R.413 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.407, B:R.413 SO4.6: 3 residues within 4Å: Chain D: R.407, Y.410, R.413 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.407, D:R.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fishman, R. et al., Structure at 2.6 A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese. Acta Crystallogr.,Sect.D (2001)

Release Date

2001-11-02

Peptides

PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN: AC
PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN

PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN

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