SMTL ID : 1jje.3 (2 other biounits)

IMP-1 METALLO BETA-LACTAMASE FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH A BIARYL SUCCINIC ACID INHIBITOR (11)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.77, H.79, D.81, H.139, C.158 Ligands: ZN.2, BYS.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.77, A:H.79, A:H.139 ZN.2: 5 residues within 4Å: Chain A: D.81, C.158, H.197 Ligands: ZN.1, BYS.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.81, A:C.158, A:H.197 ZN.4: 4 residues within 4Å: Chain A: T.20, H.34, E.199 Ligands: ACT.3 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.34, A:E.199, A:E.199, H2O.1, ACT.3 ZN.6: 7 residues within 4Å: Chain B: H.77, H.79, D.81, H.139, C.158 Ligands: ZN.7, BYS.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.77, B:H.79, B:H.139 ZN.7: 5 residues within 4Å: Chain B: D.81, C.158, H.197 Ligands: ZN.6, BYS.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.81, B:C.158, B:H.197 ZN.9: 3 residues within 4Å: Chain B: H.34, E.199 Ligands: ACT.8 5 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: B:H.34, B:E.199, B:E.199, H2O.4, ACT.8

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 9 residues within 4Å: Chain A: K.8, T.20, F.22, P.32, H.34, E.199 Chain B: F.22, V.30 Ligands: ZN.4 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.22, B:V.30, A:P.32 Water bridges: A:K.8 Salt bridges: A:K.8, A:H.34 ACT.8: 8 residues within 4Å: Chain A: H.197, S.198, E.199 Chain B: K.8, F.22, H.34, E.199 Ligands: ZN.9 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.22 Water bridges: B:K.8, B:T.20, B:T.20 Salt bridges: B:K.8, B:H.34 Hydrogen bonds: A:E.199, A:E.199

2 x BYS: 2-BENZO[1,3]DIOXOL-5-YLMETHYL-3-BENZYL-SUCCINIC ACID(Non-covalent)

BYS.5: 15 residues within 4Å: Chain A: V.25, W.28, H.77, H.79, S.80, D.81, H.139, C.158, K.161, L.165, G.166, N.167, H.197 Ligands: ZN.1, ZN.2 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.25, A:H.79, A:N.167 Hydrogen bonds: A:N.167, A:N.167 Water bridges: A:G.166, B:K.8 Salt bridges: A:H.77, A:H.79, A:H.139, A:H.139, A:K.161, A:H.197 pi-Stacking: A:W.28, A:W.28 BYS.10: 17 residues within 4Å: Chain B: V.25, W.28, F.51, H.77, H.79, S.80, D.81, H.139, C.158, K.161, G.164, L.165, G.166, N.167, H.197 Ligands: ZN.6, ZN.7 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.25, B:W.28, B:F.51, B:D.81, B:N.167, B:H.197 Hydrogen bonds: B:N.167, B:N.167 Water bridges: B:G.166 Salt bridges: B:H.77, B:H.79, B:H.139, B:H.139, B:K.161, B:H.197 pi-Stacking: B:W.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toney, J.H. et al., Succinic acids as potent inhibitors of plasmid-borne IMP-1 metallo-beta-lactamase. J.Biol.Chem. (2001)

Release Date

2001-07-25

Peptides

IMP-1 METALLO BETA-LACTAMASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IMP-1 METALLO BETA-LACTAMASE

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