- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 18 x OH: HYDROXIDE ION(Non-covalent)
OH.7: 10 residues within 4Å:- Chain A: E.35, E.66, H.69, E.148, H.181
- Ligands: OH.8, OH.9, AZI.25, MN3.31, MN3.32
Ligand excluded by PLIPOH.8: 10 residues within 4Å:- Chain A: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.7, OH.9, AZI.25, MN3.31, MN3.32
Ligand excluded by PLIPOH.9: 8 residues within 4Å:- Chain A: E.35, H.69, L.174, E.178
- Ligands: OH.7, OH.8, AZI.25, MN3.31
Ligand excluded by PLIPOH.10: 11 residues within 4Å:- Chain B: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.11, OH.12, AZI.26, MN3.33, MN3.34
Ligand excluded by PLIPOH.11: 10 residues within 4Å:- Chain B: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.10, OH.12, AZI.26, MN3.33, MN3.34
Ligand excluded by PLIPOH.12: 8 residues within 4Å:- Chain B: E.35, H.69, L.174, E.178
- Ligands: OH.10, OH.11, AZI.26, MN3.33
Ligand excluded by PLIPOH.13: 11 residues within 4Å:- Chain C: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.14, OH.15, AZI.27, MN3.35, MN3.36
Ligand excluded by PLIPOH.14: 10 residues within 4Å:- Chain C: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.13, OH.15, AZI.27, MN3.35, MN3.36
Ligand excluded by PLIPOH.15: 8 residues within 4Å:- Chain C: E.35, H.69, L.174, E.178
- Ligands: OH.13, OH.14, AZI.27, MN3.35
Ligand excluded by PLIPOH.16: 11 residues within 4Å:- Chain D: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.17, OH.18, AZI.28, MN3.37, MN3.38
Ligand excluded by PLIPOH.17: 10 residues within 4Å:- Chain D: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.16, OH.18, AZI.28, MN3.37, MN3.38
Ligand excluded by PLIPOH.18: 9 residues within 4Å:- Chain D: E.35, E.66, H.69, L.174, E.178
- Ligands: OH.16, OH.17, AZI.28, MN3.37
Ligand excluded by PLIPOH.19: 10 residues within 4Å:- Chain E: E.66, H.69, E.148, E.178, H.181
- Ligands: OH.20, OH.21, AZI.29, MN3.39, MN3.40
Ligand excluded by PLIPOH.20: 10 residues within 4Å:- Chain E: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.19, OH.21, AZI.29, MN3.39, MN3.40
Ligand excluded by PLIPOH.21: 8 residues within 4Å:- Chain E: E.35, H.69, L.174, E.178
- Ligands: OH.19, OH.20, AZI.29, MN3.39
Ligand excluded by PLIPOH.22: 11 residues within 4Å:- Chain F: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.23, OH.24, AZI.30, MN3.41, MN3.42
Ligand excluded by PLIPOH.23: 10 residues within 4Å:- Chain F: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.22, OH.24, AZI.30, MN3.41, MN3.42
Ligand excluded by PLIPOH.24: 8 residues within 4Å:- Chain F: E.35, H.69, L.174, E.178
- Ligands: OH.22, OH.23, AZI.30, MN3.41
Ligand excluded by PLIP- 6 x AZI: AZIDE ION(Non-covalent)
AZI.25: 9 residues within 4Å:- Chain A: E.35, H.69, V.155, L.174, E.178
- Ligands: OH.7, OH.8, OH.9, MN3.31
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.178, A:E.178
AZI.26: 8 residues within 4Å:- Chain B: E.35, H.69, L.174, E.178
- Ligands: OH.10, OH.11, OH.12, MN3.33
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.35
AZI.27: 8 residues within 4Å:- Chain C: E.35, H.69, L.174, E.178
- Ligands: OH.13, OH.14, OH.15, MN3.35
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.35, C:H.69
AZI.28: 8 residues within 4Å:- Chain D: E.35, H.69, L.174, E.178
- Ligands: OH.16, OH.17, OH.18, MN3.37
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:E.35, D:H.69, D:E.178
- Water bridges: D:E.35, D:E.35
AZI.29: 8 residues within 4Å:- Chain E: E.35, H.69, L.174, E.178
- Ligands: OH.19, OH.20, OH.21, MN3.39
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:E.35, E:H.69, E:E.178, E:E.178
AZI.30: 8 residues within 4Å:- Chain F: E.35, H.69, L.174, E.178
- Ligands: OH.22, OH.23, OH.24, MN3.41
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:E.35, F:E.35, F:H.69, F:E.178, F:E.178
- 12 x MN3: MANGANESE (III) ION(Covalent)(Non-covalent)
MN3.31: 8 residues within 4Å:- Chain A: E.35, E.66, H.69
- Ligands: OH.7, OH.8, OH.9, AZI.25, MN3.32
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.35, A:E.66, A:H.69
MN3.32: 7 residues within 4Å:- Chain A: E.66, R.147, E.148, H.181
- Ligands: OH.7, OH.8, MN3.31
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.66, A:E.148, A:E.148, A:H.181
MN3.33: 8 residues within 4Å:- Chain B: E.35, E.66, H.69
- Ligands: OH.10, OH.11, OH.12, AZI.26, MN3.34
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.35, B:E.66, B:H.69
MN3.34: 7 residues within 4Å:- Chain B: E.66, R.147, E.148, H.181
- Ligands: OH.10, OH.11, MN3.33
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.66, B:E.148, B:E.148, B:H.181
MN3.35: 8 residues within 4Å:- Chain C: E.35, E.66, H.69
- Ligands: OH.13, OH.14, OH.15, AZI.27, MN3.36
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.35, C:E.66, C:H.69
MN3.36: 7 residues within 4Å:- Chain C: E.66, R.147, E.148, H.181
- Ligands: OH.13, OH.14, MN3.35
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.66, C:E.148, C:E.148, C:H.181
MN3.37: 8 residues within 4Å:- Chain D: E.35, E.66, H.69
- Ligands: OH.16, OH.17, OH.18, AZI.28, MN3.38
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.35, D:E.66, D:H.69
MN3.38: 7 residues within 4Å:- Chain D: E.66, R.147, E.148, H.181
- Ligands: OH.16, OH.17, MN3.37
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.66, D:E.148, D:E.148, D:H.181
MN3.39: 8 residues within 4Å:- Chain E: E.35, E.66, H.69
- Ligands: OH.19, OH.20, OH.21, AZI.29, MN3.40
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:E.35, E:E.66, E:H.69
MN3.40: 7 residues within 4Å:- Chain E: E.66, R.147, E.148, H.181
- Ligands: OH.19, OH.20, MN3.39
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:E.66, E:E.148, E:E.148, E:H.181
MN3.41: 8 residues within 4Å:- Chain F: E.35, E.66, H.69
- Ligands: OH.22, OH.23, OH.24, AZI.30, MN3.42
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:E.35, F:E.66, F:H.69
MN3.42: 7 residues within 4Å:- Chain F: E.66, R.147, E.148, H.181
- Ligands: OH.22, OH.23, MN3.41
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:E.66, F:E.148, F:E.148, F:H.181
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.43: 7 residues within 4Å:- Chain A: S.74, T.75, G.78, N.115, A.116
- Chain B: W.47
- Chain F: I.254
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.75, A:A.116
EDO.44: 7 residues within 4Å:- Chain A: L.29, S.74, A.116, S.117, L.118
- Chain B: S.44, W.47
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Water bridges: B:S.44, A:S.74, A:S.74
- Hydrogen bonds: A:S.74, A:S.117
EDO.45: 6 residues within 4Å:- Chain A: R.142, V.145, Q.189
- Chain F: R.142, V.145, Q.189
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: A:Q.189, F:Q.189
EDO.46: 7 residues within 4Å:- Chain A: W.47
- Chain B: S.74, T.75, G.78, N.115, A.116
- Chain C: I.254
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.75, B:A.116
EDO.47: 7 residues within 4Å:- Chain A: S.44, W.47
- Chain B: L.29, S.74, A.116, S.117, L.118
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Water bridges: A:S.44
- Hydrogen bonds: B:S.74, B:S.117
EDO.48: 7 residues within 4Å:- Chain B: I.254
- Chain C: S.74, T.75, G.78, N.115, A.116
- Chain E: W.47
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.75, C:A.116
EDO.49: 7 residues within 4Å:- Chain C: L.29, S.74, A.116, S.117, L.118
- Chain E: S.44, W.47
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain E- Hydrogen bonds: C:S.117
- Water bridges: E:S.133
EDO.50: 6 residues within 4Å:- Chain B: R.142, V.145, Q.189
- Chain C: R.142, V.145, Q.189
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:Q.189, C:Q.189
EDO.51: 7 residues within 4Å:- Chain D: S.74, T.75, G.78, N.115, A.116
- Chain E: I.254
- Chain F: W.47
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:T.75, D:A.116
EDO.52: 7 residues within 4Å:- Chain D: L.29, S.74, A.116, S.117, L.118
- Chain F: S.44, W.47
3 PLIP interactions:1 interactions with chain F, 2 interactions with chain D- Water bridges: F:S.44
- Hydrogen bonds: D:S.74, D:S.117
EDO.53: 6 residues within 4Å:- Chain D: R.142, V.145, Q.189
- Chain E: R.142, V.145, Q.189
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:Q.189, E:Q.189
EDO.54: 7 residues within 4Å:- Chain C: W.47
- Chain D: I.254
- Chain E: S.74, T.75, G.78, N.115, A.116
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:T.75, E:A.116
EDO.55: 6 residues within 4Å:- Chain C: S.44, W.47
- Chain E: S.74, A.116, S.117, L.118
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain C- Water bridges: E:A.116, C:S.44
- Hydrogen bonds: C:S.44
EDO.56: 7 residues within 4Å:- Chain A: I.254
- Chain D: W.47
- Chain F: S.74, T.75, G.78, N.115, A.116
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:T.75, F:A.116
EDO.57: 7 residues within 4Å:- Chain D: S.44, W.47
- Chain F: L.29, S.74, A.116, S.117, L.118
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:S.74, F:S.117
- Water bridges: D:S.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barynin, V.V. et al., Crystal structure of manganese catalase from Lactobacillus plantarum. Structure (2001)
- Release Date
- 2002-07-13
- Peptides
- pseudocatalase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 18 x OH: HYDROXIDE ION(Non-covalent)
- 6 x AZI: AZIDE ION(Non-covalent)
- 12 x MN3: MANGANESE (III) ION(Covalent)(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barynin, V.V. et al., Crystal structure of manganese catalase from Lactobacillus plantarum. Structure (2001)
- Release Date
- 2002-07-13
- Peptides
- pseudocatalase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F