- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 18 x OH: HYDROXIDE ION(Non-covalent)
OH.2: 10 residues within 4Å:- Chain A: E.35, E.66, H.69, E.148, H.181
- Ligands: OH.3, OH.4, AZI.5, MN3.6, MN3.7
Ligand excluded by PLIPOH.3: 10 residues within 4Å:- Chain A: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.2, OH.4, AZI.5, MN3.6, MN3.7
Ligand excluded by PLIPOH.4: 8 residues within 4Å:- Chain A: E.35, H.69, L.174, E.178
- Ligands: OH.2, OH.3, AZI.5, MN3.6
Ligand excluded by PLIPOH.12: 11 residues within 4Å:- Chain B: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.13, OH.14, AZI.15, MN3.16, MN3.17
Ligand excluded by PLIPOH.13: 10 residues within 4Å:- Chain B: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.12, OH.14, AZI.15, MN3.16, MN3.17
Ligand excluded by PLIPOH.14: 8 residues within 4Å:- Chain B: E.35, H.69, L.174, E.178
- Ligands: OH.12, OH.13, AZI.15, MN3.16
Ligand excluded by PLIPOH.20: 11 residues within 4Å:- Chain C: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.21, OH.22, AZI.23, MN3.24, MN3.25
Ligand excluded by PLIPOH.21: 10 residues within 4Å:- Chain C: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.20, OH.22, AZI.23, MN3.24, MN3.25
Ligand excluded by PLIPOH.22: 8 residues within 4Å:- Chain C: E.35, H.69, L.174, E.178
- Ligands: OH.20, OH.21, AZI.23, MN3.24
Ligand excluded by PLIPOH.30: 11 residues within 4Å:- Chain D: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.31, OH.32, AZI.33, MN3.34, MN3.35
Ligand excluded by PLIPOH.31: 10 residues within 4Å:- Chain D: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.30, OH.32, AZI.33, MN3.34, MN3.35
Ligand excluded by PLIPOH.32: 9 residues within 4Å:- Chain D: E.35, E.66, H.69, L.174, E.178
- Ligands: OH.30, OH.31, AZI.33, MN3.34
Ligand excluded by PLIPOH.39: 10 residues within 4Å:- Chain E: E.66, H.69, E.148, E.178, H.181
- Ligands: OH.40, OH.41, AZI.42, MN3.43, MN3.44
Ligand excluded by PLIPOH.40: 10 residues within 4Å:- Chain E: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.39, OH.41, AZI.42, MN3.43, MN3.44
Ligand excluded by PLIPOH.41: 8 residues within 4Å:- Chain E: E.35, H.69, L.174, E.178
- Ligands: OH.39, OH.40, AZI.42, MN3.43
Ligand excluded by PLIPOH.49: 11 residues within 4Å:- Chain F: E.35, E.66, H.69, E.148, E.178, H.181
- Ligands: OH.50, OH.51, AZI.52, MN3.53, MN3.54
Ligand excluded by PLIPOH.50: 10 residues within 4Å:- Chain F: E.35, E.66, R.147, E.148, E.178
- Ligands: OH.49, OH.51, AZI.52, MN3.53, MN3.54
Ligand excluded by PLIPOH.51: 8 residues within 4Å:- Chain F: E.35, H.69, L.174, E.178
- Ligands: OH.49, OH.50, AZI.52, MN3.53
Ligand excluded by PLIP- 6 x AZI: AZIDE ION(Non-covalent)
AZI.5: 9 residues within 4Å:- Chain A: E.35, H.69, V.155, L.174, E.178
- Ligands: OH.2, OH.3, OH.4, MN3.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.35, A:E.178
AZI.15: 8 residues within 4Å:- Chain B: E.35, H.69, L.174, E.178
- Ligands: OH.12, OH.13, OH.14, MN3.16
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.35
AZI.23: 8 residues within 4Å:- Chain C: E.35, H.69, L.174, E.178
- Ligands: OH.20, OH.21, OH.22, MN3.24
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.35
AZI.33: 8 residues within 4Å:- Chain D: E.35, H.69, L.174, E.178
- Ligands: OH.30, OH.31, OH.32, MN3.34
No protein-ligand interaction detected (PLIP)AZI.42: 8 residues within 4Å:- Chain E: E.35, H.69, L.174, E.178
- Ligands: OH.39, OH.40, OH.41, MN3.43
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:E.35, E:E.178
AZI.52: 8 residues within 4Å:- Chain F: E.35, H.69, L.174, E.178
- Ligands: OH.49, OH.50, OH.51, MN3.53
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:E.178
- 12 x MN3: MANGANESE (III) ION(Covalent)(Non-covalent)
MN3.6: 8 residues within 4Å:- Chain A: E.35, E.66, H.69
- Ligands: OH.2, OH.3, OH.4, AZI.5, MN3.7
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.35, A:E.66, A:H.69
MN3.7: 7 residues within 4Å:- Chain A: E.66, R.147, E.148, H.181
- Ligands: OH.2, OH.3, MN3.6
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.66, A:E.148, A:E.148, A:H.181
MN3.16: 8 residues within 4Å:- Chain B: E.35, E.66, H.69
- Ligands: OH.12, OH.13, OH.14, AZI.15, MN3.17
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.35, B:E.66, B:H.69
MN3.17: 7 residues within 4Å:- Chain B: E.66, R.147, E.148, H.181
- Ligands: OH.12, OH.13, MN3.16
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.66, B:E.148, B:E.148, B:H.181
MN3.24: 8 residues within 4Å:- Chain C: E.35, E.66, H.69
- Ligands: OH.20, OH.21, OH.22, AZI.23, MN3.25
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.35, C:E.66, C:H.69
MN3.25: 7 residues within 4Å:- Chain C: E.66, R.147, E.148, H.181
- Ligands: OH.20, OH.21, MN3.24
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.66, C:E.148, C:E.148, C:H.181
MN3.34: 8 residues within 4Å:- Chain D: E.35, E.66, H.69
- Ligands: OH.30, OH.31, OH.32, AZI.33, MN3.35
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.35, D:E.66, D:H.69
MN3.35: 7 residues within 4Å:- Chain D: E.66, R.147, E.148, H.181
- Ligands: OH.30, OH.31, MN3.34
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.66, D:E.148, D:E.148, D:H.181
MN3.43: 8 residues within 4Å:- Chain E: E.35, E.66, H.69
- Ligands: OH.39, OH.40, OH.41, AZI.42, MN3.44
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:E.35, E:E.66, E:H.69
MN3.44: 7 residues within 4Å:- Chain E: E.66, R.147, E.148, H.181
- Ligands: OH.39, OH.40, MN3.43
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:E.66, E:E.148, E:E.148, E:H.181
MN3.53: 8 residues within 4Å:- Chain F: E.35, E.66, H.69
- Ligands: OH.49, OH.50, OH.51, AZI.52, MN3.54
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:E.35, F:E.66, F:H.69
MN3.54: 7 residues within 4Å:- Chain F: E.66, R.147, E.148, H.181
- Ligands: OH.49, OH.50, MN3.53
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:E.66, F:E.148, F:E.148, F:H.181
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 7 residues within 4Å:- Chain A: S.74, T.75, G.78, N.115, A.116
- Chain B: W.47
- Chain F: I.254
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.75, A:A.116
EDO.9: 7 residues within 4Å:- Chain A: L.29, S.74, A.116, S.117, L.118
- Chain B: S.44, W.47
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.74, A:S.117
- Water bridges: A:S.74, A:S.74, B:S.44
EDO.10: 7 residues within 4Å:- Chain A: S.44, W.47
- Chain B: L.29, S.74, A.116, S.117, L.118
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Water bridges: A:S.44
- Hydrogen bonds: B:S.74, B:S.117
EDO.18: 7 residues within 4Å:- Chain A: W.47
- Chain B: S.74, T.75, G.78, N.115, A.116
- Chain C: I.254
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.75, B:A.116
EDO.26: 7 residues within 4Å:- Chain B: I.254
- Chain C: S.74, T.75, G.78, N.115, A.116
- Chain E: W.47
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.75, C:A.116
EDO.27: 7 residues within 4Å:- Chain C: L.29, S.74, A.116, S.117, L.118
- Chain E: S.44, W.47
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain C- Water bridges: E:S.133
- Hydrogen bonds: C:S.117
EDO.28: 6 residues within 4Å:- Chain B: R.142, V.145, Q.189
- Chain C: R.142, V.145, Q.189
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:Q.189, B:Q.189
EDO.36: 7 residues within 4Å:- Chain D: S.74, T.75, G.78, N.115, A.116
- Chain E: I.254
- Chain F: W.47
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:T.75, D:A.116
EDO.37: 7 residues within 4Å:- Chain D: L.29, S.74, A.116, S.117, L.118
- Chain F: S.44, W.47
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:S.74, D:S.117
- Water bridges: F:S.44
EDO.45: 6 residues within 4Å:- Chain D: R.142, V.145, Q.189
- Chain E: R.142, V.145, Q.189
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:Q.189, E:Q.189
EDO.46: 7 residues within 4Å:- Chain C: W.47
- Chain D: I.254
- Chain E: S.74, T.75, G.78, N.115, A.116
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:T.75, E:A.116
EDO.47: 6 residues within 4Å:- Chain C: S.44, W.47
- Chain E: S.74, A.116, S.117, L.118
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain C- Water bridges: E:A.116, C:S.44
- Hydrogen bonds: C:S.44
EDO.55: 6 residues within 4Å:- Chain A: R.142, V.145, Q.189
- Chain F: R.142, V.145, Q.189
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: A:Q.189, F:Q.189
EDO.56: 7 residues within 4Å:- Chain A: I.254
- Chain D: W.47
- Chain F: S.74, T.75, G.78, N.115, A.116
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:T.75, F:A.116
EDO.57: 7 residues within 4Å:- Chain D: S.44, W.47
- Chain F: L.29, S.74, A.116, S.117, L.118
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:S.74, F:S.117
- Water bridges: D:S.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barynin, V.V. et al., Crystal structure of manganese catalase from Lactobacillus plantarum. Structure (2001)
- Release Date
- 2002-07-13
- Peptides
- pseudocatalase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 18 x OH: HYDROXIDE ION(Non-covalent)
- 6 x AZI: AZIDE ION(Non-covalent)
- 12 x MN3: MANGANESE (III) ION(Covalent)(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barynin, V.V. et al., Crystal structure of manganese catalase from Lactobacillus plantarum. Structure (2001)
- Release Date
- 2002-07-13
- Peptides
- pseudocatalase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F