SMTL ID : 1jma.1

CRYSTAL STRUCTURE OF THE HERPES SIMPLEX VIRUS GLYCOPROTEIN D BOUND TO THE CELLULAR RECEPTOR HVEA/HVEM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain B: Y.2, I.40, Q.41, P.92, N.94, N.171 No protein-ligand interaction detected (PLIP)

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: P.42, G.43, T.44, C.58, C.73, R.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.41, A:G.43 SO4.3: 3 residues within 4Å: Chain A: I.90, C.100, R.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.100 Salt bridges: A:R.101 SO4.4: 3 residues within 4Å: Chain B: P.31, R.130, E.226 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.130 SO4.5: 4 residues within 4Å: Chain B: K.190, Y.191, G.240, H.242 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.190, B:H.242 SO4.6: 5 residues within 4Å: Chain B: P.47, I.55, M.102, L.165, Q.178 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carfi, A. et al., Herpes simplex virus glycoprotein D bound to the human receptor HveA. Mol.Cell (2001)

Release Date

2001-09-26

Peptides

HERPESVIRUS ENTRY MEDIATOR: A
GLYCOPROTEIN D: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

HERPESVIRUS ENTRY MEDIATOR

GLYCOPROTEIN D