SMTL ID : 1jmj.1

Crystal Structure of Native Heparin Cofactor II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: N.312, L.314, N.368 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: H.290, H.292 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.290, A:H.292, H2O.2, H2O.5

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain B: N.312, N.368 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.312, B:N.368 Water bridges: B:N.368, B:N.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baglin, T.P. et al., Crystal structures of native and thrombin-complexed heparin cofactor II reveal a multistep allosteric mechanism. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-08-30

Peptides

HEPARIN COFACTOR II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HEPARIN COFACTOR II

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