SMTL ID : 1joc.1

EEA1 homodimer of C-terminal FYVE domain bound to inositol 1,3-diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.88, C.91, C.116, C.119 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.88, A:C.91, A:C.116, A:C.119 ZN.2: 4 residues within 4Å: Chain A: C.72, C.75, C.96, C.99 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.72, A:C.75, A:C.96, A:C.99 ZN.4: 4 residues within 4Å: Chain B: C.88, C.91, C.116, C.119 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.88, B:C.91, B:C.116, B:C.119 ZN.5: 4 residues within 4Å: Chain B: C.72, C.75, C.96, C.99 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.72, B:C.75, B:C.96, B:C.99

2 x ITP: PHOSPHORIC ACID MONO-(2,3,4,6-TETRAHYDROXY-5-PHOSPHONOOXY-CYCLOHEXYL) ESTER(Non-covalent)

ITP.3: 8 residues within 4Å: Chain A: W.63, D.66, R.84, R.85, H.86, H.87, R.89, R.114 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:H.87, A:H.87 Water bridges: A:R.85, A:H.86, A:R.89, A:R.89, A:R.114, A:R.114 Salt bridges: A:R.84, A:H.86, A:R.89, A:R.114 ITP.6: 8 residues within 4Å: Chain B: W.63, D.66, R.84, R.85, H.86, H.87, R.89, R.114 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:W.63, B:H.87, B:H.87, B:H.87 Water bridges: B:R.114, B:R.114 Salt bridges: B:R.84, B:H.86, B:R.89, B:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dumas, J.J. et al., Multivalent endosome targeting by homodimeric EEA1. Mol.Cell (2001)

Release Date

2001-12-28

Peptides

Early Endosomal Autoantigen 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Early Endosomal Autoantigen 1