- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)(Covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.3: 32 residues within 4Å:- Chain A: E.41, G.42, D.43, L.64, L.201, I.202, A.203, G.204, G.205, T.206, D.207, V.208, W.211, L.225, R.269, F.270, A.271, V.275, A.279, T.280, G.283, N.284, A.286, N.287, I.291, G.292, D.293, R.330, F.335, V.336, K.352, Q.359
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:L.64, A:A.271, A:V.275
- Hydrogen bonds: A:L.201, A:L.201, A:A.203, A:G.204, A:G.205, A:T.206, A:T.206, A:D.207, A:V.208, A:A.271, A:T.280, A:N.284, A:D.293, A:D.293, A:V.336, A:V.336
FAD.10: 33 residues within 4Å:- Chain C: E.41, G.42, D.43, L.64, L.201, I.202, A.203, G.204, G.205, T.206, D.207, V.208, W.211, L.225, A.245, R.269, F.270, A.271, V.275, A.279, T.280, G.283, N.284, A.286, N.287, G.292, D.293, R.330, F.335, V.336, K.352, Q.359, D.360
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:L.64, C:A.271, C:V.275
- Hydrogen bonds: C:L.201, C:A.203, C:G.204, C:G.205, C:T.206, C:T.206, C:D.207, C:V.208, C:A.271, C:T.280, C:N.284, C:D.293, C:D.293, C:D.293, C:V.336, C:V.336, C:K.352
- pi-Stacking: C:F.270
- 2 x CA: CALCIUM ION(Non-covalent)
CA.4: 5 residues within 4Å:- Chain B: E.172, H.173, Y.175, T.266, G.267
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.173, B:T.266, B:G.267
CA.11: 5 residues within 4Å:- Chain D: E.172, H.173, Y.175, T.266, G.267
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:Y.175, D:T.266
- 2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
MTE.5: 22 residues within 4Å:- Chain A: Q.102, C.136
- Chain B: G.226, G.227, F.228, G.229, R.342, M.488, G.489, Q.490, T.527, A.528, A.529, S.530, S.531, G.532, A.533, Q.663, G.729, E.730
- Ligands: MOS.6, 141.7
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:G.227, B:F.228, B:M.488, B:Q.490, B:G.532, B:A.533, B:Q.663, B:Q.663, A:Q.102
MTE.12: 21 residues within 4Å:- Chain C: Q.102
- Chain D: G.226, G.227, F.228, G.229, R.342, M.488, G.489, Q.490, L.492, T.527, A.528, A.529, S.530, S.531, G.532, A.533, Q.663, E.730
- Ligands: MOS.13, 141.14
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:G.227, D:F.228, D:M.488, D:Q.490, D:G.532, D:A.533, D:Q.663, D:Q.663, C:Q.102
- 2 x MOS: DIOXOTHIOMOLYBDENUM(VI) ION(Non-covalent)
MOS.6: 10 residues within 4Å:- Chain B: Q.197, F.228, G.229, F.341, R.342, A.528, A.529, E.730
- Ligands: MTE.5, 141.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.730
MOS.13: 11 residues within 4Å:- Chain D: Q.197, F.228, G.229, F.341, R.342, T.527, A.528, A.529, E.730
- Ligands: MTE.12, 141.14
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.730
- 2 x 141: Oxypurinol(Non-covalent)
141.7: 10 residues within 4Å:- Chain B: E.232, R.310, F.344, F.459, T.460, A.528, A.529, E.730
- Ligands: MTE.5, MOS.6
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:A.528
- Hydrogen bonds: B:R.310, B:T.460, B:A.529, B:E.730
- pi-Stacking: B:F.344
141.14: 10 residues within 4Å:- Chain D: E.232, R.310, F.344, F.459, T.460, A.528, A.529, E.730
- Ligands: MTE.12, MOS.13
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:A.528
- Hydrogen bonds: D:R.310, D:T.460, D:A.529, D:E.730
- pi-Stacking: D:F.344
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Truglio, J.J. et al., Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus. Structure (2002)
- Release Date
- 2002-01-11
- Peptides
- xanthine dehydrogenase, chain A: AC
xanthine dehydrogenase, chain B: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EC
GB
FD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)(Covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
- 2 x MOS: DIOXOTHIOMOLYBDENUM(VI) ION(Non-covalent)
- 2 x 141: Oxypurinol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Truglio, J.J. et al., Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus. Structure (2002)
- Release Date
- 2002-01-11
- Peptides
- xanthine dehydrogenase, chain A: AC
xanthine dehydrogenase, chain B: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EC
GB
FD
H