SMTL ID : 1jsz.1

Crystal Structure Analysis of N7,9-dimethylguanine-VP39 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: Q.39, L.42, Y.66, I.67, G.68, S.69, A.70, P.71, G.72, H.74, I.94, D.95, R.97, R.114, F.115, V.116, D.138, V.139, R.140, L.159 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Q.39, A:Y.66, A:G.68, A:G.68, A:A.70, A:A.70, A:G.72, A:R.97, A:V.116, A:V.116, A:D.138, A:R.140 Salt bridges: A:H.74 pi-Stacking: A:F.115, A:F.115

1 x NDM: 7,9-DIMETHYLGUANINE(Non-covalent)

NDM.2: 5 residues within 4Å: Chain A: Y.22, F.180, D.182, Y.204, E.233 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.233 Salt bridges: A:D.182, A:E.233 pi-Stacking: A:Y.22, A:F.180, A:F.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, G. et al., The "cap-binding slot" of an mRNA cap-binding protein: quantitative effects of aromatic side chain choice in the double-stacking sandwich with cap. Biochemistry (2002)

Release Date

2002-07-10

Peptides

VP39: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VP39

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