SMTL ID : 1jts.1 (1 other biounit)

DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-12-mer

Ligands

12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 3 residues within 4Å: Chain A: D.146 Chain E: D.146 Chain I: D.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.146 TRS.2: 6 residues within 4Å: Chain A: A.57, E.167 Chain H: A.57, E.167 Chain J: A.57, E.167 No protein-ligand interaction detected (PLIP) TRS.3: 3 residues within 4Å: Chain C: D.146 Chain F: D.146 Chain L: D.146 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:R.153, F:D.146 TRS.4: 3 residues within 4Å: Chain D: E.64 Chain F: E.64 Chain I: E.64 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:E.64, D:E.64, F:E.64 TRS.5: 5 residues within 4Å: Chain D: A.57, E.167 Chain F: A.57, E.167 Chain I: E.167 No protein-ligand interaction detected (PLIP) TRS.6: 4 residues within 4Å: Chain D: D.146 Chain G: D.146 Chain J: D.146, R.153 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain J Hydrogen bonds: D:D.146, J:R.153 TRS.7: 4 residues within 4Å: Chain B: E.167 Chain E: E.167 Chain L: A.57, E.167 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.167 TRS.8: 3 residues within 4Å: Chain C: E.64 Chain G: E.64 Chain K: E.64 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain G Hydrogen bonds: K:E.64, G:E.64 TRS.9: 4 residues within 4Å: Chain C: A.57, E.167 Chain G: E.167 Chain K: E.167 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.167 TRS.10: 3 residues within 4Å: Chain B: D.146 Chain H: D.146 Chain K: D.146 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.146 TRS.11: 3 residues within 4Å: Chain A: E.64 Chain H: E.64 Chain J: E.64 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain H, 1 interactions with chain J Hydrogen bonds: A:E.64, H:E.64, J:E.64 Water bridges: A:E.64, A:E.64 TRS.12: 3 residues within 4Å: Chain B: E.64 Chain E: E.64 Chain L: E.64 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:E.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, J. et al., DNA Protection and Binding by E. Coli Dps Protein. To be Published

Release Date

2003-06-17

Peptides

DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA PROTECTION DURING STARVATION PROTEIN

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