- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NDG.4: 2 residues within 4Å:- Chain A: T.942, N.943
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.742, A:N.943
NAG-NDG.6: 6 residues within 4Å:- Chain A: D.622, P.624, I.654, R.698
- Chain B: Y.557, N.559
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.654
- Hydrogen bonds: B:N.559
NAG-NDG.7: 9 residues within 4Å:- Chain A: P.758
- Chain B: L.645, K.646, D.647, T.648, G.649, K.650, A.652, N.654
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:P.758, B:L.645, B:K.646
- Hydrogen bonds: B:K.646, B:D.647, B:G.649
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.8: 1 residues within 4Å:- Chain A: N.260
No protein-ligand interaction detected (PLIP)NAG.9: 8 residues within 4Å:- Chain A: P.451, I.453, L.454, N.455, N.458, T.460, S.471, C.472
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.455, A:N.458
NAG.15: 4 residues within 4Å:- Chain A: R.248, M.272
- Chain B: N.316, N.320
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:R.248
- Hydrogen bonds: A:R.248, B:N.320
NAG.16: 3 residues within 4Å:- Chain B: N.371, S.398, E.400
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.371, B:S.398
- 6 x CA: CALCIUM ION(Non-covalent)
CA.10: 4 residues within 4Å:- Chain A: D.230, N.232, I.236, D.238
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.230, A:I.236, A:D.238
CA.11: 5 residues within 4Å:- Chain A: D.284, N.286, D.288, Y.290, D.292
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.284, A:D.288, A:Y.290, A:D.292
CA.12: 8 residues within 4Å:- Chain A: D.349, D.351, D.353, F.355, N.356, D.357, N.377, G.378
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.351, A:D.351, A:D.353, A:F.355, A:D.357
CA.13: 6 residues within 4Å:- Chain A: D.413, D.415, N.417, Y.419, P.420, D.421
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.415, A:Y.419, A:P.420, A:D.421, A:D.421
CA.14: 6 residues within 4Å:- Chain A: C.596, G.597, D.599, N.600, V.601, E.636
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:G.597, A:D.599, A:V.601, A:E.636
CA.17: 4 residues within 4Å:- Chain B: S.123, D.126, D.127, M.335
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:S.123, B:D.126, B:D.126, B:D.127, B:M.335
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiong, J.P. et al., Crystal structure of the extracellular segment of integrin alpha Vbeta3. Science (2001)
- Release Date
- 2001-10-17
- Peptides
- INTEGRIN, ALPHA V: A
PLATELET MEMBRANE GLYCOPROTEIN IIIA BETA SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiong, J.P. et al., Crystal structure of the extracellular segment of integrin alpha Vbeta3. Science (2001)
- Release Date
- 2001-10-17
- Peptides
- INTEGRIN, ALPHA V: A
PLATELET MEMBRANE GLYCOPROTEIN IIIA BETA SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B